View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_11 (Length: 603)
Name: NF21097_low_11
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 28439253 - 28438667
Alignment:
| Q |
1 |
atatttcacacacacaacgttagacattaaatttcaagatatcgattgactggacaagttcatgttctgttatgtagacaattagattggagtattatca |
100 |
Q |
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| T |
28439253 |
atatttcacacacacaacgttagacattaaatttcaagatatcgattgactggacaagttcatgttctgttatgtagacaattagattggagtattatca |
28439154 |
T |
|
| Q |
101 |
ttcctgcaaatggtacatgggctatatacttcgttaatatattttcttggcgttagctctccggtttttaggaaaagacacacaatcaaagataagaacg |
200 |
Q |
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| T |
28439153 |
ttcctgcaaatggtacatgggctatatacttcgttaatatattttcttggcgttagctctccggtttttaggaaaagacacacaatcaaagataagaacg |
28439054 |
T |
|
| Q |
201 |
gtctaatcaataatgttccatttacaaatcaaactcgtgtttttcgtaacgattcatattttggtggatgttataacacttgagccacttannnnnnnnn |
300 |
Q |
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| T |
28439053 |
gtctaatcaataatgttccatttacaaatcaaactcgtgtttttcgtaacgattcatattttggtggatgttataacacttgagccacttattttttgtt |
28438954 |
T |
|
| Q |
301 |
nnnnnnngaagacaacacctgagccacttggttaatattctatttgggcgtgtaatacaatttaaactatttatcgggtttctctcaatatacgtataaa |
400 |
Q |
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| T |
28438953 |
ttgttttgaagacaacacctgagccacttggttaatattctatttgggcgtgtaatacaatttaaactatttatcgggtttctctcaatatacgtataaa |
28438854 |
T |
|
| Q |
401 |
cactaaaaattgttaattggtaaatattgctgtactcctccataaaaaattgaaaggctatctgaaatattgtcgggtttcactgcttttagataacctt |
500 |
Q |
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| T |
28438853 |
cactaaaaattgttaattggtaaatattgctgtactcctccataaaaaattgaaaggctatctgaaatattgtcgggtttcactgcttttagataacctt |
28438754 |
T |
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| Q |
501 |
cattcagtaggttgacacctttttagggaatccactcctttgcttggtaaacaagcaacaatatatatattgctttactcgcatgga |
587 |
Q |
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| T |
28438753 |
cattcagtaggttgacacctttttagggaatccactcctttgcttggtaaacaagcaacaatatatatattgctttactcgcatgga |
28438667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 523 - 566
Target Start/End: Original strand, 696996 - 697039
Alignment:
| Q |
523 |
ttagggaatccactcctttgcttggtaaacaagcaacaatatat |
566 |
Q |
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| T |
696996 |
ttagggaatccactcatttgcttggtaaataagcaacaatatat |
697039 |
T |
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