View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_111 (Length: 215)
Name: NF21097_low_111
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_111 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 8680111 - 8680306
Alignment:
| Q |
1 |
cggttaagatatgaaggattgcattctagagttgatgataactctaatagtgacatgggtttcccatgcttttcaatggcttcagctataccaagttcaa |
100 |
Q |
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| T |
8680111 |
cggttaagatatgaaggattgcatcctagagttgatgataactctaatagtgacattggtttcccatgcttttcaatggcttcagctataccaagttcaa |
8680210 |
T |
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| Q |
101 |
ttgcacatttcaccacagcttggtcagcaaaaccaaatatgtatttccatatttccacttgagcttctgcttcttctttctcattctcatccttct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8680211 |
ttgcacatttcaccacagcttggtcagcaaaaccaaatatgtatttccatatttccacttgagcttctgcttcttctttctcattctcatccttct |
8680306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 37742299 - 37742477
Alignment:
| Q |
1 |
cggttaagatatgaaggattgcattctagagttgatgataactctaatagtgacatgggtttcccatgcttttcaatggcttcagctataccaagttcaa |
100 |
Q |
| |
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||||||| |||||||| || |||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37742299 |
cggttaacatatgaagaatcacattttagagttgatgataactctagtagtgacatgggttttttgtgcttttcaatggcttcagctataccaagttcaa |
37742398 |
T |
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| Q |
101 |
ttgcacatttcaccacagcttggtcagcaaaaccaaatatgtatttccatatttccacttgagcttctgcttcttcttt |
179 |
Q |
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||||||||||||| |||||| | ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
37742399 |
ttgcacatttcactacagctagctcaacaaaaccaaatatgtacttccatatttctacttgagcttctgcttcttcttt |
37742477 |
T |
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