View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_112 (Length: 213)
Name: NF21097_low_112
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_112 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 27959241 - 27959425
Alignment:
| Q |
13 |
agaagaagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagct |
112 |
Q |
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| T |
27959241 |
agaagaagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagct |
27959340 |
T |
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| Q |
113 |
gagaaagctgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcattt |
197 |
Q |
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| T |
27959341 |
gagaaagctgttcttgaatttggagaacaacatggtttggatattgtaactcttgtaccaagttttgttgttggaccctttattt |
27959425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 27985549 - 27985733
Alignment:
| Q |
13 |
agaagaagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagct |
112 |
Q |
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| T |
27985549 |
agaagtagaggtaatggatgaaagttattggagtgatgtgaataatcttagaactttgaaaccttttgcttggtcatatgctgtttctaaaaccctagct |
27985648 |
T |
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| Q |
113 |
gagaaagctgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcattt |
197 |
Q |
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| T |
27985649 |
gagaaagctgttcttgaatttggagaacaacatggtttggatattgtgactcttctacccacttttgttgttggacctttcattt |
27985733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 27994731 - 27994915
Alignment:
| Q |
13 |
agaagaagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagct |
112 |
Q |
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| T |
27994731 |
agaagaagatacaatggatgaaagttattggagtgatgtgaatattcttagaactttgaagccatttgcttggtcatatggtgtttctaagacactagct |
27994830 |
T |
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| Q |
113 |
gagaaagctgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcattt |
197 |
Q |
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| T |
27994831 |
gagaaagctgttcttgaatttggagaacaacatgggttggatattgtgactcttgtaccaccttttgttgtaggacctttcattt |
27994915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 28013416 - 28013593
Alignment:
| Q |
20 |
gatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagctgagaaag |
119 |
Q |
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| T |
28013416 |
gatgtaatggatgagagttattggagtgatgaaaatcttcttagagatttgaaaccatttgcttggtcatattcaatttctaaaactatggcagagaaag |
28013515 |
T |
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| Q |
120 |
ctgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcattt |
197 |
Q |
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| T |
28013516 |
ctgttcttgaatttggagaacaacatggtttagatgttgtgactataataccaacttttgttcttggaccattcattt |
28013593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 28005478 - 28005654
Alignment:
| Q |
21 |
atgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagctgagaaagc |
120 |
Q |
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| T |
28005478 |
atgtaatggatgagagttattggagtgatgaaaatattcttagagatttgaaaccatttggttggtcgtattcaatttctaaaacaatggcagagaaggt |
28005577 |
T |
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| Q |
121 |
tgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcattt |
197 |
Q |
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| T |
28005578 |
tgttctagagtttggagaacaacttggtttagatgttgtgactataataccaactttagttgttggatccttcattt |
28005654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 27944697 - 27944826
Alignment:
| Q |
18 |
aagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagctgagaa |
117 |
Q |
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| T |
27944697 |
aagatgtgttggatgagagtgattggagtgatgttgatttgcttagaagtgttaaaccatttggttggaattatgctgtttctaagacattggctgagaa |
27944796 |
T |
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| Q |
118 |
agctgttctagaatttggagaacaacatgg |
147 |
Q |
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| T |
27944797 |
agctgttcttgaatttggtgaacaaaatgg |
27944826 |
T |
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