View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_113 (Length: 212)
Name: NF21097_low_113
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_113 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 12343520 - 12343328
Alignment:
| Q |
20 |
aatagcaccgttgaccttttgtccattttatttgcaattcttcctagctgaaactgtgaaattgacttcaacaatgaacaaatagttatgcttctgtgct |
119 |
Q |
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| T |
12343520 |
aatagcaccgttgaccttttgtccattttatttgcaattcttcccagctgaaactgtgaaattgacttcaacaatgaacaaatagttatgcttctgtgct |
12343421 |
T |
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| Q |
120 |
agagttttttatgttcttaaccgaagatacaaatctataatgatgctgcagaaatagtaattttcaagttgttttccatgttaagcatcattt |
212 |
Q |
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| T |
12343420 |
agagttttttatgttcttaaccgaagatacaaatctataatgatgctgcagaaatagtaattttcaagttgttttccatgttaagcatcattt |
12343328 |
T |
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Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 41819556 - 41819394
Alignment:
| Q |
30 |
ttgaccttttgtccattttatttgcaattcttcctagctgaaactgtgaaattgacttcaacaatgaacaaatagttatgcttctgtgctagagtttttt |
129 |
Q |
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| T |
41819556 |
ttgaccttttgtccactttatatgcatttcttcctagttgaaactgtgaaactggatccaggaaagaaccaagagttaggcttctgtactagagttattt |
41819457 |
T |
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| Q |
130 |
atgttcttaaccgaagatacaaatctataatg-atgctgcagaaatagtaattttcaagttgt |
191 |
Q |
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| T |
41819456 |
atgttcttagccgaagatacaaatctatgaggaatgccgcagaaatagtaatcttcaggttgt |
41819394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 41826197 - 41826047
Alignment:
| Q |
36 |
ttttgtccattttatttgcaattcttcctagctgaaactgtgaaattgacttcaacaatgaacaaatagttatgcttctgtgctagagttttttatgttc |
135 |
Q |
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| T |
41826197 |
ttttgtccagtttatatgcaatttttcctagttgaaactgtaaaactagctcccagaaagaaccaagagttaggcttctgctctaaagttagttatgttg |
41826098 |
T |
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| Q |
136 |
ttaaccgaagatacaaatctataatga-tgctgcagaaatagtaattttca |
185 |
Q |
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| T |
41826097 |
ttagccgaagatataaatctatgaggaatgctgcggaaatagtaatcttca |
41826047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 22820032 - 22820076
Alignment:
| Q |
36 |
ttttgtccattttatttgcaattcttcctagctgaaactgtgaaa |
80 |
Q |
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| T |
22820032 |
ttttgtccagtttatatgcaattcttcctagttgaaactgtgaaa |
22820076 |
T |
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