View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_114 (Length: 201)
Name: NF21097_low_114
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_114 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 12996283 - 12996449
Alignment:
| Q |
18 |
tatctggtggagcttatatacctacctttttgtcttcaaggaacaaaagagaaaccaaacaactagtgttggcaattttttgttaagtattctttagttt |
117 |
Q |
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| T |
12996283 |
tatctggtggagcttatatacctacctttttgtcttcaaggaacaaaagagaaaccaaacaactagtgttggcaattttttgttaagtattctttagttt |
12996382 |
T |
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| Q |
118 |
acacttacatgttgtgcatgaacaatgaatggtatgctctggctgatacaattctgactttgattct |
184 |
Q |
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| T |
12996383 |
acacttacatgttgtgcatgaacaatgaatggtatgctctggctgatacaattctgactttgattct |
12996449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 13070935 - 13071101
Alignment:
| Q |
18 |
tatctggtggagcttatatacctacctttttgtcttcaaggaacaaaagagaaaccaaacaactagtgttggcaattttttgttaagtattctttagttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13070935 |
tatctggtggagcttatatacctacctttttgtcttcaaggaacaaaagagaaaccaaacaactagtgttggcaattttttgttaagtattctttagttt |
13071034 |
T |
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| Q |
118 |
acacttacatgttgtgcatgaacaatgaatggtatgctctggctgatacaattctgactttgattct |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13071035 |
acacttacatgttgtgcatgaacaatgaatggtatgctctggctgatacaattctgactttgattct |
13071101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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