View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_13 (Length: 580)
Name: NF21097_low_13
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 3 - 560
Target Start/End: Complemental strand, 17470884 - 17470327
Alignment:
| Q |
3 |
aggagcagcacagaacaagaagaacaccggtcgcaacatcgccggaatcttattattccccggcaatctttgatataatgtaacaaaaagtaccaaataa |
102 |
Q |
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| T |
17470884 |
aggagcagcaaagaacaagaagaacaccggtcgcaacatcgccggaatcttattattccccggcaatctttgatataatgtaacaaaaagtaccaaataa |
17470785 |
T |
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| Q |
103 |
tgtgcaataccaagagnnnnnnngcatattgcactctctttccaacccatttgtgcagcagctagtgcagcaaccaagttaccaataacagacatttgac |
202 |
Q |
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| T |
17470784 |
tgtgcaataccaagagaaaaaaagcatattgcactctctttccaacccatttgtgcagcagctagtgcagcaaccaagttaccaatgacagacatttgac |
17470685 |
T |
|
| Q |
203 |
tcgtcggattcgcaaccatcgacaaaaacatcttccctttagtaaaccactgaccatagattttcacatcaagaataaccacaggaacaacaaacaataa |
302 |
Q |
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| T |
17470684 |
tcgtcggattcgcaaccatcgacaaaaacatcttccctttagtaaaccactgaccataaattttcacatcaagaataaccacaggaacaacaaacaataa |
17470585 |
T |
|
| Q |
303 |
ccagaggattttgtaatgaagtgctgcaggtggtacaattggtgatgattgtaacaaaagtagccaagaaatccatggagcaaacatgtagtttacacca |
402 |
Q |
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| T |
17470584 |
ccagaggattttgtaatgaagtgctgcaggtggtacaattggcgatgattgtaacaaaagtaaccaagaaatccatggagcaaacatgtagtttacacca |
17470485 |
T |
|
| Q |
403 |
atttggttgaagaattcttctttaactttatcaaagtgaagtaaacattttagaagatagagaaaagagagtgtgagtagtgtgaataaggctagggacc |
502 |
Q |
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| T |
17470484 |
atttggttgaagaattcttctttaactttatcaaagtgaagtaaacattttagaagatagagaaaagagagtgtgagtagtgtgaataaggctagggacc |
17470385 |
T |
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| Q |
503 |
ataagagagtaaaagctgttgagggtatcattgtaaatatgtgtcttagaatatgtgc |
560 |
Q |
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| T |
17470384 |
ataagagagtaaaagctgttgagggtatcattgtaaatatgtgtcttagaatatgtgc |
17470327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 52780138 - 52780081
Alignment:
| Q |
233 |
tcttccctttagtaaaccactgaccatagattttcacatcaagaataaccacaggaac |
290 |
Q |
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| T |
52780138 |
tcttccctttagtaaaccactggccgtaaattttaacatcgagaacaaccaccggaac |
52780081 |
T |
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