View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_low_17 (Length: 514)
Name: NF21097_low_17
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 20 - 504
Target Start/End: Original strand, 5398868 - 5399353
Alignment:
| Q |
20 |
agttgtagcttagaataaggtcaacaacgtcaactttaattcctcattatttcattattattacatggttgtatatacactatgtatgtaatt-gtaatc |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
5398868 |
agttgtagcttagaataag-tcaacaacgtcaactttaattcctcattatttcattattattacatggttgtatatatactatgtttgtaatttgtaatc |
5398966 |
T |
|
| Q |
119 |
ag-tatcaataataatatagccaattctctatatggtatcagacttagccttagcctaacagcatctcacgatccatacctccttcactatggcagccac |
217 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5398967 |
tgctatcaattataatatagccaattctctatatggtatcagacttagccttagcctaacagcatctcacgatccatacctccttcactatggcagccac |
5399066 |
T |
|
| Q |
218 |
cacaaacccaacaaaaacaagtcttcttattcatgcttccatcactcttaagctttctcgagccagtcatcgtgcatggaaacgtcaggctacctctctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5399067 |
cacaaacccaacaaaaacaagtcttcttattcatgcttccatcactcttaagctttctcgagccagtcatcgtgcctggaaacgtcaggctacctctctt |
5399166 |
T |
|
| Q |
318 |
ctctctggtatccaagtcattggccatattgatggaaccacaccttctcaaagtcccaccattgttactgctggtgtctcaaccccaaatccacaataca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5399167 |
ctctctggtatccaagtcattggccatattgatggaaccacaccttctcaaagtcccaccattgttactgctggtgtctcaaccccaaatccacaataca |
5399266 |
T |
|
| Q |
418 |
taaattggttcactattgaccaactcatcatcaatcttcttatctcctctatgacagaagcagacagtatatcatttgcctcctatg |
504 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5399267 |
caaattggttcactattgatcaactcatcatcaatcttcttatctcctctatgacagaagcagacagtatatcatttgcctcctatg |
5399353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 5403302 - 5403433
Alignment:
| Q |
20 |
agttgtagcttagaataaggtcaacaacgtcaactttaattcctcattatttcattattattacatggttgtatatacactatgtatgtaa-ttgtaatc |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
5403302 |
agttgtagcttagaataag-tcaacaacgtcaactttaattcctcattatttcattattattacatggttgtatatatactatgtttgtaatttgtaatc |
5403400 |
T |
|
| Q |
119 |
ag-tatcaataataatatagccaattctctata |
150 |
Q |
| |
|
| ||||||| |||||||||||||||||||||| |
|
|
| T |
5403401 |
tgctatcaattataatatagccaattctctata |
5403433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 39728927 - 39728989
Alignment:
| Q |
23 |
tgtagcttagaataaggtcaacaacgtcaactttaattcctcattatttcattattattacatg |
86 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
39728927 |
tgtagcttagaataag-tcaacaacgtcaatcttaatttatcattatttcattattattacatg |
39728989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 20 - 504
Target Start/End: Original strand, 3539866 - 3540350
Alignment:
| Q |
20 |
agttgtagcttagaataaggtcaacaacgtcaactttaattcctcattatttcattattattacatggttgtatatacactatgtatgtaatt-gtaatc |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
3539866 |
agttgtagcttagaataag-tcaacaacgtcaactttaattcctcattatttcattattattatatggttgtatatatactatgtatgtaatttgtaatt |
3539964 |
T |
|
| Q |
119 |
agtatcaataataatatagccaattctctatatggtatcagacttagccttagcctaacagcatctcacgatccatacctccttcactatggcagccacc |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3539965 |
agaatcaataataatatagccaattctctatatggtatcagacttagccttagcctaacagcatctcacgatccatacatccttcactatggcagccacc |
3540064 |
T |
|
| Q |
219 |
acaaacccaacaaaaacaagtcttcttattcatgcttccatcactcttaagctttctcgagccagtcatcgtgcatggaaacgtcaggctacctctcttc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3540065 |
acaaacccaacaaaaacaagtcttcttattcatgcttccatcactattaagctttctcgagccagtcatcgtgcctggaaacgtcaggctacctctcttc |
3540164 |
T |
|
| Q |
319 |
tctctggtatccaagtcattggccatattgatggaaccacaccttctcaaagtcccaccattgttactgctggtgtctcaaccccaaatccacaatacat |
418 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3540165 |
tctccggtatccaagacattggccatattgatggaaccacaccttctcaaagtcccaccattgttactgctggtgtctcaaccccaaatccacaatacac |
3540264 |
T |
|
| Q |
419 |
aaattggttcactattgaccaactcatcatcaatcttcttatctcctctatgacagaagcagacagtatatcatttgcctcctatg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3540265 |
aaattggttcactattgaccaactcatcatcaatcttcttatctcctttatgacagaagcagacagtatatcatttgcctcctatg |
3540350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 34695472 - 34695345
Alignment:
| Q |
23 |
tgtagcttagaataaggtcaacaacgtcaactttaattcctcattatttcattattattacatggttgtatatacactatgtatgtaa-ttgtaatcagt |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| || |
|
|
| T |
34695472 |
tgtagcttagaataag-tcaacaacgtcaactttaattcctcattatttcattattattacatggttgtatatatactatgtttgtaatttgtaatctgt |
34695374 |
T |
|
| Q |
122 |
atcaataataatatagccaattctctata |
150 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34695373 |
atcaataataatatagccaattctctata |
34695345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 3544289 - 3544419
Alignment:
| Q |
20 |
agttgtagcttagaataaggtcaacaacgtcaactttaattcctcattatttcattattattacatggttgtatatacactatgtatgtaa-ttgtaatc |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
3544289 |
agttgtagcttagaataag-tcaacaacgtcaactttaattcctcattatttcattattattatatggttgtatatatactatgtatgtaatttgtaatt |
3544387 |
T |
|
| Q |
119 |
agtatcaataataatatagccaattctctata |
150 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
|
|
| T |
3544388 |
agaatcaataataatatagccaattctctata |
3544419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 6517024 - 6516897
Alignment:
| Q |
23 |
tgtagcttagaataaggtcaacaacgtcaactttaattcctcattatttcattattattacatggttgtatatacactatgtatgtaa-ttgtaatcagt |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| || |
|
|
| T |
6517024 |
tgtagcttagaataag-tcaacaacgtcaactttaattcctcattatttcattattattacatggttgtatatatactatgtttgtaatttgtaatctgt |
6516926 |
T |
|
| Q |
122 |
atcaataataatatagccaattctctata |
150 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
6516925 |
atcaattataatatagccaattctctata |
6516897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 504
Target Start/End: Original strand, 1700494 - 1700584
Alignment:
| Q |
414 |
tacataaattggttcactattgaccaactcatcatcaatcttcttatctcctctatgacagaagcagacagtatatcatttgcctcctatg |
504 |
Q |
| |
|
|||| ||| ||||||||| |||| || || ||||||||||||||| ||||||| |||||||| || ||||| || || ||||| ||||||| |
|
|
| T |
1700494 |
tacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacagcatctcctttgcttcctatg |
1700584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 473
Target Start/End: Original strand, 180108 - 180169
Alignment:
| Q |
412 |
aatacataaattggttcactattgaccaactcatcatcaatcttcttatctcctctatgaca |
473 |
Q |
| |
|
|||||| ||| ||||||||| |||| || || ||||||||||||||| ||||||| |||||| |
|
|
| T |
180108 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgaca |
180169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University