View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_18 (Length: 513)
Name: NF21097_low_18
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 11585588 - 11586095
Alignment:
| Q |
1 |
gagaagaatatgctactagggttcttactcaagaataatttccaaaaagtgaatttcaccatttccaccatatacttgaaagatggtatcccccgacaaa |
100 |
Q |
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| T |
11585588 |
gagaagcatatgctactagggttcttactcaagaataatttccaaaaagtgaatttcaccatttccatcatatacttgaaagatggtatccctcgacaaa |
11585687 |
T |
|
| Q |
101 |
gnnnnnnntcatt---------aacctaaccctccaaccaacacccaacccttgaaaactatcaaaatatagtacaacacaagaagggtataaccaagcc |
191 |
Q |
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| T |
11585688 |
gaaaaaa-tcatttcaagagctaacctaaccctccaaccaacacccaacccttgaaaactatcaaaatgtagtacaacacaagaagggtataaccaagcc |
11585786 |
T |
|
| Q |
192 |
gcatatagacggtatcaatgacatacttccaagtgtgatccaatctagggttagcctctattggtaacccaagatatgtagtgaagaaattgctctccca |
291 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11585787 |
gcatataggcggtatcaatgacatacttccaagtgtgatccaatctagggttagcctctattggtaacccaagatatgtagtgaagaaattgctctccca |
11585886 |
T |
|
| Q |
292 |
ctcctggaa----gctatttacattggcattcaaaacactacttgtggaaaagttagcattgtggcaagtttaaagcaccataagatagctttgagtgac |
387 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11585887 |
ctcctggaaactcgctatttacattggcattcaaaacactacttgtggaaaagttatcattgtggcaagtttaaagcaccataagatagctttgagtgac |
11585986 |
T |
|
| Q |
388 |
caatggttctccaaaaatagattttcccaagaacaatgtatcatgtgcatactaaaggtaggaaattgacataccaaaattacccacctttaacctaaag |
487 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
11585987 |
caatggttctccaaaaatagattttcccaagaacaatgtatcatgtgcatactaaaggtaggacattgacataccaaagttacccacctttaacctaaag |
11586086 |
T |
|
| Q |
488 |
tacatatta |
496 |
Q |
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| T |
11586087 |
tacatatta |
11586095 |
T |
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