View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_low_19 (Length: 512)
Name: NF21097_low_19
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 202 - 495
Target Start/End: Original strand, 11585798 - 11586095
Alignment:
| Q |
202 |
gtatcaatgatatacttccaagtgtgatccaatctagggttagcctctattggtaacccaagatatgtagtgaagaaattgctctcccactcctggaa-- |
299 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11585798 |
gtatcaatgacatacttccaagtgtgatccaatctagggttagcctctattggtaacccaagatatgtagtgaagaaattgctctcccactcctggaaac |
11585897 |
T |
|
| Q |
300 |
--gctatttacattggcattcaaaacactacttgtggaaaagttagcattgtggcaagtttaaagcaccataagatagctttgagtgaccaatggttctc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11585898 |
tcgctatttacattggcattcaaaacactacttgtggaaaagttatcattgtggcaagtttaaagcaccataagatagctttgagtgaccaatggttctc |
11585997 |
T |
|
| Q |
398 |
caaaaatagattttcccaagaacaatgtatcatgtgcatactaaaggtaggaaattgacataccaaaattacccacctttaacctaaagtacatatta |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11585998 |
caaaaatagattttcccaagaacaatgtatcatgtgcatactaaaggtaggacattgacataccaaagttacccacctttaacctaaagtacatatta |
11586095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 11585612 - 11585417
Alignment:
| Q |
1 |
agaaccctagtagcatattcttctcctataagtgtgaagtgaagcctactatatgctttagccgataggtttcttttgggtgttggagaggggtgtcaat |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11585612 |
agaaccctagtagcatatgcttctcctataagtgtgaaatgaagcctactatgtgctttagccgataggtttcttttgggtgttggagaggggtgtcgat |
11585513 |
T |
|
| Q |
101 |
agccttgtcggacctgttgtttgctcttgaccggctccctcacggtgtctcacctttcctcatttttgtcgtgggctagtcatcggtatatgttct |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11585512 |
ggccttgtcggacctgttgtttgctcttgaccggctccctcacagtgtctcacctttcctcatttttgtcgtgggctagtcatcagtatatgttct |
11585417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University