View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_low_20 (Length: 508)

Name: NF21097_low_20
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21097_low_20
NF21097_low_20
[»] chr3 (1 HSPs)
chr3 (98-411)||(9631285-9631623)
[»] chr7 (2 HSPs)
chr7 (98-408)||(16775034-16775369)
chr7 (438-484)||(16774973-16775019)
[»] chr6 (3 HSPs)
chr6 (374-473)||(15690529-15690628)
chr6 (356-468)||(6672373-6672485)
chr6 (4-39)||(12594570-12594605)
[»] chr4 (1 HSPs)
chr4 (73-155)||(36085802-36085884)
[»] chr5 (1 HSPs)
chr5 (315-347)||(17000409-17000441)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 98 - 411
Target Start/End: Complemental strand, 9631623 - 9631285
Alignment:
Q  98 ccaagcaaactaatccctcacaagcatttcatcaaacactttatgtgccat-ctccaaacacccacatttagcatacat-------------gc------ 177  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||             ||          
T  9631623 ccaagtaaacaaatccctcacaagcatttcatcaaacactttatgtgcctttctccaaacacccacatttagcatacatagtcatcaacttggcctatat 9631524  T
Q  178 -tcagaaagatataacaaaatcaaaaccttatgcctgaaattgatgatggagaaagatagaataagacataaactgattcagacctattatcannnnnnn 276  Q
     ||||||| ||||||||||||||||  ||||| |||| |||||| |||||||||||||| |||||||||||||||||| ||||  ||||||||           
T  9631523 atcagaaacatataacaaaatcaaatacttatacctgcaattgaggatggagaaagataaaataagacataaactgatccagatttattatcatttttcc 9631424  T
Q  277 n-----cccctaaaatccaattgatcttgcatctaagaatgaaacagagggaaatcagaaccctaaatacaacaatgcaatgaagatagaatgaattgta 371  Q
          ||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||  ||||||||||  | |||  |||||||||||| ||     
T  9631423 tattttcccctaaaatctaattgatcaagcatctaagaatgaaacagagggaaatcagaacccctaatacaacaacacgatg-ggatagaatgaatagtg 9631325  T
Q  372 tgagataaatatgtgatataatctacctgactgaatcgtg 411  Q
    | ||||| |||||||||  ||||||||| |||||||||||    
T  9631324 ttagatagatatgtgatggaatctaccttactgaatcgtg 9631285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 98 - 408
Target Start/End: Complemental strand, 16775369 - 16775034
Alignment:
Q  98 ccaagcaaactaatccctcacaagcatttcatcaaacactttatgtgccat-ctccaaacacccacatttagcatacat-------------gc------ 177  Q
    ||||| |||| ||||||||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||||             ||          
T  16775369 ccaagtaaacaaatccctcacaagcatttcatcaaatactttatgtgtctttctccaaacacccacatttagcatacataatcatcaacttggcatatat 16775270  T
Q  178 -tcagaaagatataacaaaatcaaaaccttatgcctgaaattgatgatggagaaagatagaataagacataaactgattcagacctattatca-----nn 271  Q
     ||||||| ||||||||||||||||  ||||| |||| |||||| ||||||||||||||||||||||||||||||||| ||||  ||||||||           
T  16775269 atcagaaacatataacaaaatcaaacacttatacctgcaattgaggatggagaaagatagaataagacataaactgatccagatttattatcatttttcc 16775170  T
Q  272 nnnnnncccctaaaatccaattgatcttgcatctaagaatgaaacagagggaaatcagaaccctaaatacaacaatgcaatgaagatagaatgaattgta 371  Q
          |||||||||||||||| |||  |||| ||||||||||||||||||||||||||||||||||||||||||    |||  | |||||||||| ||     
T  16775169 tattttcccctaaaatccaattaatcaagcatttaagaatgaaacagagggaaatcagaaccctaaatacaacaacatgatg-ggctagaatgaatggtg 16775071  T
Q  372 tgagataaatatgtgatataatctacctgactgaatc 408  Q
    | ||||| |||||||||  ||||||||||||||||||    
T  16775070 ttagatagatatgtgatggaatctacctgactgaatc 16775034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 484
Target Start/End: Complemental strand, 16775019 - 16774973
Alignment:
Q  438 gacgaagatgagagaatctgcgagagtgagagatacgtcggcgaggt 484  Q
    ||||||||||  |||||||||||||| |||||||||| |||||||||    
T  16775019 gacgaagatgccagaatctgcgagagggagagatacggcggcgaggt 16774973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 374 - 473
Target Start/End: Original strand, 15690529 - 15690628
Alignment:
Q  374 agataaatatgtgatataatctacctgactgaatcgtgttctgagttaacctcatcaaaagcaagacgaagatgagagaatctgcgagagtgagagatac 473  Q
    ||||||| |||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  15690529 agataaacatgtgatggaatctacccgactgaatcgtgttctgagttaacctcatcaaaagcaagacgaagatgagagaatttgagagagtgagagatac 15690628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 356 - 468
Target Start/End: Complemental strand, 6672485 - 6672373
Alignment:
Q  356 gatagaatgaattgtatgagataaatatgtgatataatctacctgactgaatcgtgttctgagttaacctcatcaaaagcaagacgaagatgagagaatc 455  Q
    |||||||||| | |||| ||||| |||||||||  ||||||||||| ||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  6672485 gatagaatgattggtattagatagatatgtgatggaatctacctgattgaatcgtgttctggattaacctcagcaaaagcaagacgaagatgagagaatc 6672386  T
Q  456 tgcgagagtgaga 468  Q
    |||||||||||||    
T  6672385 tgcgagagtgaga 6672373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 12594570 - 12594605
Alignment:
Q  4 acagaaattgtcgccactatccgatctatctatcta 39  Q
    ||||||||||||||||||||| ||||||||||||||    
T  12594570 acagaaattgtcgccactatctgatctatctatcta 12594605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 36085802 - 36085884
Alignment:
Q  73 ttgaacaaggaccaatcataacattccaagcaaactaatccctcacaagcatttcatcaaacactttatgtgccatctccaaa 155  Q
    ||||||||| |||||||||| ||  ||||| |||| ||| | |||||| ||||||||||||||||||||||||| ||||||||    
T  36085802 ttgaacaagaaccaatcatagcagaccaagtaaacaaattcatcacaatcatttcatcaaacactttatgtgccttctccaaa 36085884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 17000409 - 17000441
Alignment:
Q  315 acagagggaaatcagaaccctaaatacaacaat 347  Q
    ||||| |||||||||||||||||||||||||||    
T  17000409 acagatggaaatcagaaccctaaatacaacaat 17000441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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