View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_21 (Length: 498)
Name: NF21097_low_21
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 20 - 487
Target Start/End: Complemental strand, 39264736 - 39264263
Alignment:
| Q |
20 |
tctatttgcagttctcactgttggttttcttagaacaatagagaacaaaaaatgtgtcgaggtgtgtagccggagttgagggaaagaagaagggttcaac |
119 |
Q |
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| T |
39264736 |
tctatttgcagttctcactgttggttttcttagcacaatatagaacaaaaaatgtgtcgaggtgtgtagccggagttgagggaaagaagaagggttcaac |
39264637 |
T |
|
| Q |
120 |
attcaccatcatggacattgttctctgtttataagtttctttaagagaggattaaggttggtaaggcttctggtatcgttaccctgtgacatatccaaga |
219 |
Q |
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| T |
39264636 |
attcaccatcatgggcattgttctctgtttataagtttctttaagagaggattaaggttggtaaggcttctggtatcgttaccctgtgacatatccaaga |
39264537 |
T |
|
| Q |
220 |
tcttggttgcctttgacagtaacaattacatgatatatttgaaatatttgacagtatagttaatgaaacacaatgtnnnnnnngatagaagtatctttga |
319 |
Q |
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| T |
39264536 |
tcttggttgtctttgacagtaacaattacatgatatatttgaaatatttgacagtatagttaatgaaacacaatgtaaaaaaagatagaagtatctttga |
39264437 |
T |
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| Q |
320 |
gttgaggtacgtaacattgtcgagaat------gagggagaggaagaggaataagagtaattctatgatcaacataatgtaacaatttcaaagttttatt |
413 |
Q |
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| T |
39264436 |
gttgaggtacgtaacattgtcaagaatgagggagagggagagggagaggaataagagtaattctatgatcaacataatgtaacaatttcaaagttttatt |
39264337 |
T |
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| Q |
414 |
ttgtaaaaatttatttgtattcttaccctaaaacaaatcttaaggtcttattttcactcatatttatagttcat |
487 |
Q |
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| T |
39264336 |
ttgtaaaaatttatttgtattcttaccctaaaacaaatcttaaggtcttattttcactcatatttatagttcat |
39264263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 247 - 487
Target Start/End: Complemental strand, 11628262 - 11628029
Alignment:
| Q |
247 |
acatgatatatttgaaatatttgacagtatagttaatgaaacacaatgtnnnnnnngatagaagtatctttgagttgaggtacgtaacattgtcgagaat |
346 |
Q |
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| T |
11628262 |
acatgatatatttaaaatatttgacaaagtacttgaagaaacacaatgtaaacaaagatagaagtatctttgagctgaggtatttaacattgtcgagaat |
11628163 |
T |
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| Q |
347 |
gagggagaggaagaggaataagagtaattctatgatcaacataatgtaacaatttcaaagttttattttgtaaaaatttatttgtattcttaccctaaaa |
446 |
Q |
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| T |
11628162 |
gagggagaggaa------taagagtaattctatgatcaacata-tgtataaatttcaaagttttattttgtacaaatttgtttgtattcttacccaaaat |
11628070 |
T |
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| Q |
447 |
caaatcttaaggtcttattttcactcatatttatagttcat |
487 |
Q |
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| T |
11628069 |
caaatcttaaggtcttattttcactcatttttatagttcat |
11628029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 5566478 - 5566566
Alignment:
| Q |
54 |
acaatagagaacaaaaaatgtgtcgaggtg-tgtagccggagttgagggaaagaagaagggttcaacattcaccatcatggacattgtt |
141 |
Q |
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|||| |||||| |||||||| ||||||||| ||||||| ||| | || |||||||||| ||| ||||| |||||||||||||||||||| |
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| T |
5566478 |
acaaaagagaagaaaaaatgggtcgaggtggtgtagcccgagataagtgaaagaagaaaggtgcaacaatcaccatcatggacattgtt |
5566566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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