View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_22 (Length: 497)
Name: NF21097_low_22
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Complemental strand, 27470713 - 27470311
Alignment:
| Q |
17 |
atatttcatactagaagtgaaagatcattatggcgtttgaacaaaaattgtaactccatttcctgtttaacttgattcatctaatgtgttcgtatttagt |
116 |
Q |
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| T |
27470713 |
atatttgatattagaagtgaaagatcattatgtcgtttgaacaaaaattgtaactccatttcctgtttaacttgattcatctaatgtgttcgtattcagt |
27470614 |
T |
|
| Q |
117 |
ttccaaaccccactttgtatcaaatgttcctaatttaatcttcaataaagatattcatatggcaacagtcaacatgaacaaggagttactgaagtggtaa |
216 |
Q |
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| T |
27470613 |
ttgcaaaccccactttgtatcaaatgttcctaatttaatcttcaataaagatattcatatggcaacagtcaacatgaacaaggagttactgaagtggtaa |
27470514 |
T |
|
| Q |
217 |
ctaaggcctagaacattttatgattataaataaattggaatcaacatttgattcttcatcttataatcttatcactgtgtgcatgtcttcctcaatgaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27470513 |
ctaaggcctagaacattttatgattataaataaattggaatcaacatttgattcttcatcttataatcttatcactgtgtgcatgtcttcctcaatgaat |
27470414 |
T |
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| Q |
317 |
atcaaattggcagaatcaaacaaaaatgatgagcagaacttgttctctgtcactaaccttatttctaaattgagcaaaaacattgcatgaaggattaatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27470413 |
atcaaattggcagaatcaaacaaaaatgatgagcagaacttgttctctgtcactaaccttatttctaaattgagcaaaaacattgcatgaaggattaatt |
27470314 |
T |
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| Q |
417 |
ttg |
419 |
Q |
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| T |
27470313 |
ttg |
27470311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 263 - 357
Target Start/End: Original strand, 40606860 - 40606952
Alignment:
| Q |
263 |
tttgattcttcatcttataatcttatcactgtgtgcatgtcttcctcaatgaatatcaaattggcagaatcaaacaaaaatgatgagcagaactt |
357 |
Q |
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| T |
40606860 |
tttgatttttcatcttataatcttatccttgtgtgcatgtcttcctcgatgaatatcaaattggcaaaatcaa--aaaaatgatgagcagaactt |
40606952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 40607009 - 40607069
Alignment:
| Q |
351 |
agaacttgttctctgtcactaaccttatttctaaattgagcaaaaacattgcatgaaggat |
411 |
Q |
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| T |
40607009 |
agaacttgttctctaatactacccttatttctaaattgagcaaaagcattgcatgaaggat |
40607069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 487
Target Start/End: Complemental strand, 27470302 - 27470256
Alignment:
| Q |
441 |
catcacagatttatattgagtctttgtatctcatatttgtcttcatc |
487 |
Q |
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| T |
27470302 |
catcgcagatttatattgagtctttgtatctcagctttgtcttcatc |
27470256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 21110476 - 21110420
Alignment:
| Q |
263 |
tttgattcttcatcttataatcttatcactgtgtgcatgtcttcctcaatgaatatc |
319 |
Q |
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| T |
21110476 |
tttgattcttcttctaataatcttatcattgtgtacatgtcttcctccatgaatatc |
21110420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 21115688 - 21115632
Alignment:
| Q |
263 |
tttgattcttcatcttataatcttatcactgtgtgcatgtcttcctcaatgaatatc |
319 |
Q |
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| T |
21115688 |
tttgattcttcttctaataatcttatcattgtgtacatgtcttcctccatgaatatc |
21115632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 2463817 - 2463897
Alignment:
| Q |
185 |
tcaacatgaacaaggagt-tactgaagtggtaactaaggcctagaacattttatgattataaataaattggaatcaacatt |
264 |
Q |
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|||||||||||||||||| ||||||| | |||| | |||||||||||||||||| || | ||||||| |||| ||||||| |
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| T |
2463817 |
tcaacatgaacaaggagtatactgaaattgtaattgaggcctagaacattttatcatcagaaataaaaaggaaacaacatt |
2463897 |
T |
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