View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_low_26 (Length: 482)

Name: NF21097_low_26
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21097_low_26
NF21097_low_26
[»] chr7 (17 HSPs)
chr7 (183-451)||(8544556-8544824)
chr7 (225-447)||(8580662-8580884)
chr7 (187-451)||(8569238-8569502)
chr7 (16-175)||(8541519-8541676)
chr7 (196-446)||(8575235-8575485)
chr7 (241-439)||(8383868-8384066)
chr7 (196-439)||(8608853-8609096)
chr7 (225-439)||(8589603-8589817)
chr7 (243-440)||(29578663-29578866)
chr7 (325-432)||(8601036-8601143)
chr7 (246-439)||(29582833-29583032)
chr7 (16-108)||(34998617-34998709)
chr7 (253-411)||(7878750-7878908)
chr7 (392-445)||(8537168-8537221)
chr7 (47-108)||(30783412-30783473)
chr7 (47-108)||(45627340-45627401)
chr7 (52-105)||(46910236-46910289)
[»] chr8 (10 HSPs)
chr8 (187-439)||(12527431-12527683)
chr8 (16-109)||(30208287-30208380)
chr8 (16-110)||(1162043-1162137)
chr8 (47-107)||(31333091-31333151)
chr8 (56-106)||(16782313-16782363)
chr8 (16-110)||(35179248-35179340)
chr8 (16-108)||(40719821-40719915)
chr8 (16-107)||(5594871-5594962)
chr8 (52-108)||(34514569-34514625)
chr8 (47-110)||(36132793-36132856)
[»] chr5 (6 HSPs)
chr5 (16-108)||(37872129-37872221)
chr5 (47-108)||(20524531-20524592)
chr5 (52-108)||(23145929-23145985)
chr5 (57-109)||(42285298-42285350)
chr5 (52-110)||(16778261-16778319)
chr5 (52-105)||(22472083-22472136)
[»] chr3 (9 HSPs)
chr3 (52-109)||(2008524-2008581)
chr3 (58-108)||(25199073-25199123)
chr3 (52-109)||(1994780-1994837)
chr3 (16-107)||(22831103-22831194)
chr3 (52-109)||(45805454-45805511)
chr3 (53-108)||(22220334-22220389)
chr3 (60-110)||(44880383-44880433)
chr3 (60-108)||(34060954-34061002)
chr3 (56-108)||(39170905-39170957)
[»] chr4 (4 HSPs)
chr4 (44-108)||(46550632-46550696)
chr4 (53-108)||(41464731-41464786)
chr4 (52-110)||(47541735-47541793)
chr4 (44-108)||(15827052-15827116)
[»] chr1 (10 HSPs)
chr1 (16-108)||(41942868-41942960)
chr1 (52-108)||(16253154-16253210)
chr1 (52-108)||(24241602-24241658)
chr1 (16-111)||(48506767-48506862)
chr1 (45-110)||(34773345-34773410)
chr1 (52-104)||(26764622-26764674)
chr1 (16-108)||(8971517-8971609)
chr1 (52-107)||(15390402-15390457)
chr1 (60-108)||(21356922-21356970)
chr1 (54-82)||(39744121-39744149)
[»] chr2 (7 HSPs)
chr2 (50-108)||(34480055-34480113)
chr2 (56-108)||(3870156-3870208)
chr2 (44-108)||(36400972-36401036)
chr2 (16-109)||(37721537-37721630)
chr2 (60-108)||(9009115-9009163)
chr2 (52-85)||(29685526-29685559)
chr2 (53-105)||(28733717-28733769)
[»] scaffold0288 (1 HSPs)
scaffold0288 (44-108)||(17977-18042)
[»] chr6 (2 HSPs)
chr6 (52-108)||(994872-994928)
chr6 (58-105)||(2141175-2141222)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 183 - 451
Target Start/End: Original strand, 8544556 - 8544824
Alignment:
Q  183 actaaagaatccaaatcactttccccatcagattaaccttggttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaa 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||    
T  8544556 actaaagaatccaaatcactttccccatcagattaaccttggttgatcttgttcatggaagattcaaagatgctctcaagctccttcaaaaagtccacaa 8544655  T
Q  283 acacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaact 382  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8544656 acacaaatgcatcttcctgttggttgttatcaatcaaactttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaatt 8544755  T
Q  383 aatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatttcttgcttcaac 451  Q
    || |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  8544756 aacacaatcatccttcattactttcctcacattgtaaagataatactccaaagcatttcttgcttcaac 8544824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 225 - 447
Target Start/End: Original strand, 8580662 - 8580884
Alignment:
Q  225 ttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaccttt 324  Q
    |||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8580662 ttgatcttgttcatggaagattcaaagatgctctcaagctccttcagaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaacttt 8580761  T
Q  325 ttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagata 424  Q
    |||||||||||||||||||||| || ||   ||||||||||| || |||||| ||||||| ||||| ||||| ||||||||||||||| |||||||||||    
T  8580762 ttccctttatcattgcagaattaatcttttctttgtctacagtggtgagctttgaactaacacaattatcctccattactttcctcactttgtaaagata 8580861  T
Q  425 atcatccaaagcatttcttgctt 447  Q
    ||| |||||||||||| ||||||    
T  8580862 atcgtccaaagcatttattgctt 8580884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 187 - 451
Target Start/End: Original strand, 8569238 - 8569502
Alignment:
Q  187 aagaatccaaatcactttccccatcagattaaccttggttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaaacac 286  Q
    |||||||| ||||||||| | ||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8569238 aagaatccgaatcacttttctcatcagagtcacctttgttgatcttgttcatagcagattcaaagatgctctcaagctccttcagaaagtccacaaacac 8569337  T
Q  287 aaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaata 386  Q
    ||| | |||||| || ||| | | | ||||||| |||||||||||  ||||||| || ||||| |||  |||||||||||| | |||||| || ||| ||    
T  8569338 aaaggtatcttcttgctggctatcaccaatcaaactttttcccttggtcattgctgagttgatcttctctttgtctacaggagtgagctttgagctagta 8569437  T
Q  387 caatcatccttcattactttcctcacattgtaaagataatcatccaaagcatttcttgcttcaac 451  Q
    | ||| | |||||||||||| || || ||||||||||||||||||||||||||||||||||||||    
T  8569438 ctatcgttcttcattacttttcttactttgtaaagataatcatccaaagcatttcttgcttcaac 8569502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 8541519 - 8541676
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctcatcatgt 115  Q
    |||||||||||||||||||||       ||||||| ||  ||||||||||||||||||||||||||| |||||| | ||||||| |||||||||||||||    
T  8541519 atcaatttcctccttattattaaaaaaatacttcttta--tgtgtgtgaccaaacactatttctttgatcctataaccatattaaaatttctcatcatgt 8541616  T
Q  116 gtactacatatttcaaaagtatatcaaagacatatggagtctctttaactcaacaatttt 175  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8541617 atactacatatttcaaaagtatatcaaagacaaatggagtctctttaactcaacaatttt 8541676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 196 - 446
Target Start/End: Original strand, 8575235 - 8575485
Alignment:
Q  196 aatcactttccccatcagattaaccttggttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatc 295  Q
    ||||||||||| ||||||| || |||| ||| ||||| ||| ||| ||||||||||||||||||||||||||| |  ||||| ||||| ||| |   |||    
T  8575235 aatcactttcctcatcagagtagcctttgttaatcttgttcttagaagattcaaagatgctctcaagctcctttagcaagtctacaaaaacagacatatc 8575334  T
Q  296 ttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatcc 395  Q
    |||||| |||||   ||| ||||| |||| ||||||||||||||| ||||| || |||  |||||| ||||||| |||||| |||| || || |||||||    
T  8575335 ttcctgctggttaccatcgatcaaactttctccctttatcattgctgaattaatcttctctttgtcgacaggggtgagctttgaaccaacaccatcatcc 8575434  T
Q  396 ttcattactttcctcacattgtaaagataatcatccaaagcatttcttgct 446  Q
    ||||||| ||||||| |||||| ||||||||| ||||| |||||| |||||    
T  8575435 ttcattaatttcctcgcattgtgaagataatcgtccaatgcatttattgct 8575485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 241 - 439
Target Start/End: Complemental strand, 8384066 - 8383868
Alignment:
Q  241 cagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgc 340  Q
    |||||||||||||||||||||||||| ||| |||||||||||| |||||||  ||||  || | |||   ||||||||||||||| ||||| ||||| ||    
T  8384066 cagattcaaagatgctctcaagctccatcagaaagtccacaaatacaaatgtttctttgtgcttgttaccatcaatcaaccttttccccttcatcatagc 8383967  T
Q  341 agaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatt 439  Q
    ||||||||| || ||||||||||  |||  |||| | ||| ||| || |||||| ||||||||||||||||  |||||||||||||| |||||||||||    
T  8383966 agaattgatctttattttgtctattgggttgagcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcatt 8383868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 196 - 439
Target Start/End: Original strand, 8608853 - 8609096
Alignment:
Q  196 aatcactttccccatcagattaaccttggttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatc 295  Q
    ||||||||||| ||||||| |||||||  || ||||| |||| |||||||||||| ||  ||||||||||||||| ||||||||||||||||||||  ||    
T  8608853 aatcactttcctcatcagagtaacctttattaatcttgttcaaagcagattcaaatatcttctcaagctccttcagaaagtccacaaacacaaatgtttc 8608952  T
Q  296 ttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatcc 395  Q
     |  || |  |||| |||||||||  | ||||| ||||||||||||| |||||  |||||||||||   || ||  ||| ||||| ||| ||   |||||    
T  8608953 atgttgctctttgtcatcaatcaaattctttccttttatcattgcagcattgagcttcattttgtcagtagaggtaagcatggaagtaacactcccatcc 8609052  T
Q  396 ttcattactttcctcacattgtaaagataatcatccaaagcatt 439  Q
    ||||||||||||| ||  |||||||| |||||||||||| ||||    
T  8609053 ttcattactttccgcatgttgtaaaggtaatcatccaaaacatt 8609096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 439
Target Start/End: Original strand, 8589603 - 8589817
Alignment:
Q  225 ttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaccttt 324  Q
    |||| ||| |||| |||||| |||||  || ||| ||||||| |||| ||||||||||||||| |||  || |   | |||||||  ||||| ||  |||    
T  8589603 ttgaacttgttcaaagcagaatcaaatgtgttcttaagctccctcaagaagtccacaaacacatatgtctcctttggctggttgtcgtcaattaattttt 8589702  T
Q  325 ttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagata 424  Q
    | |||||||||||||||||||||||  ||| |||||| ||||  |  |||||||||   | ||  ||||||||||||||||||||||  | |||||||||    
T  8589703 tcccctttatcattgcagaattgattctcactttgtcaacagaagtaagcttggaagctacactgtcatccttcattactttcctcatgtcgtaaagata 8589802  T
Q  425 atcatccaaagcatt 439  Q
    |||||| ||||||||    
T  8589803 atcatctaaagcatt 8589817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 440
Target Start/End: Complemental strand, 29578866 - 29578663
Alignment:
Q  243 gattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttg------ttatcaatcaacctttttccctttatca 336  Q
    |||||||||||| | ||||||||||| |||||||| ||||||||  |||  || |  || ||||||      ||||||||||| || ||||| || || |    
T  29578866 gattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgctggttgccatgattatcaatcaaactctttccattcataa 29578767  T
Q  337 ttgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagc 436  Q
    | ||||||| ||| |||||||||||| |||| || ||| ||||||||| ||  | ||||| ||||||||| |||   |||||||||||||| ||||||||    
T  29578766 tcgcagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagc 29578667  T
Q  437 attt 440  Q
    ||||    
T  29578666 attt 29578663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 432
Target Start/End: Original strand, 8601036 - 8601143
Alignment:
Q  325 ttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagata 424  Q
    ||||||||||||||||||| ||||| |||||| | ||||  |  |  ||| ||||||||| || |||||||||||||||||| |||| | ||||||||||    
T  8601036 ttccctttatcattgcagagttgatcttcattctttctattgaagtaagcatggaactaacactatcatccttcattacttttctcatagtgtaaagata 8601135  T
Q  425 atcatcca 432  Q
    ||||||||    
T  8601136 atcatcca 8601143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 246 - 439
Target Start/End: Complemental strand, 29583032 - 29582833
Alignment:
Q  246 tcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttg------ttatcaatcaacctttttccctttatcattg 339  Q
    ||||||||||  | |||||||||||||||||||||||||||  |||| ||||  || ||||||      ||||||||||| |||||||| || || ||||    
T  29583032 tcaaagatgccttgaagctccttcaaaaagtccacaaacacgcatgcttctttgtgctggttgccatgattatcaatcaaactttttccgttcataattg 29582933  T
Q  340 cagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatt 439  Q
    |||||||||| ||  |||||||| |||| |  | | |||||||||     | ||||| ||||||||| ||||  ||||||||||| || |||||||||||    
T  29582932 cagaattgatctttgttttgtctgcaggagtcaccatggaactaacgttgttatcctccattactttactcattttgtaaagatagtcgtccaaagcatt 29582833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 34998617 - 34998709
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||| ||||||||||||       || |||| |||||||||||||||||| ||| |||||||| || | ||| ||||||||||||||||    
T  34998617 atcaattttctccttattattaaaaaaatatttctttatgtgtgtgtgaccaaatactttttctttgatcatgtgaccatattagaatttctc 34998709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 411
Target Start/End: Complemental strand, 7878908 - 7878750
Alignment:
Q  253 tgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatatt 352  Q
    |||||||||||||| ||| |||||| ||||||||||  |  || |  |  || |||| |||||| ||  ||| ||||||||| |||||||||||||| |     
T  7878908 tgctctcaagctccctcagaaagtcgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttc 7878809  T
Q  353 cattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctca 411  Q
    || ||| || ||||| | |||||| ||| |||  | |||||||||||||||||||||||    
T  7878808 caatttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctca 7878750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 8537168 - 8537221
Alignment:
Q  392 atccttcattactttcctcacattgtaaagataatcatccaaagcatttcttgc 445  Q
    ||||||||| |||||| |||||||||| ||||| ||||||||||||||| ||||    
T  8537168 atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgc 8537221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 30783473 - 30783412
Alignment:
Q  47 ttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||| |||||||||||||||||||||| ||| ||||||| | ||| ||| ||||||||||||    
T  30783473 ttctttatgtgtgtgtgaccaaacactttttatttggtcatgtgaccattttagaatttctc 30783412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 45627401 - 45627340
Alignment:
Q  47 ttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||| |||||||||||||||||||| | ||| ||||||| | ||| ||| ||||||||||||    
T  45627401 ttctttatgtgtgtgtgaccaaacagtttttatttggtcatgtgaccattttagaatttctc 45627340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 46910289 - 46910236
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaattt 105  Q
    ||||||| ||||| |||||||| ||||||| ||| | |||||||||||||||||    
T  46910289 tatgtgtttgtgatcaaacactttttctttagtcttgtgatcatattagaattt 46910236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 5e-57; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 187 - 439
Target Start/End: Original strand, 12527431 - 12527683
Alignment:
Q  187 aagaatccaaatcactttccccatcagattaaccttggttgatcttcttcatagcagattcaaagatgctctcaagctccttcaaaaagtccacaaacac 286  Q
    |||||||  ||||||||||  || | || ||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  12527431 aagaatcagaatcactttcttcaccggagtaacctttgttgatcttattcaaagcagatccaaagatgctctcaagctccttcaaaaagtccaaaaacac 12527530  T
Q  287 aaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaata 386  Q
    ||||| ||||||||| | |||   ||||||||| |||||||||||||||||||||||||  ||    |||||||||||||| |  ||| ||||||||| |    
T  12527531 aaatgtatcttcctgcttgtttccatcaatcaagctttttccctttatcattgcagaatctatcaaaattttgtctacaggtgtcagcatggaactaaca 12527630  T
Q  387 caatcatccttcattactttcctcacattgtaaagataatcatccaaagcatt 439  Q
    |||| ||||||||| | ||||||||||| ||||||||| ||||||||||||||    
T  12527631 caattatccttcatgattttcctcacatggtaaagatagtcatccaaagcatt 12527683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 30208287 - 30208380
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctca 109  Q
    |||||||||||||||||||||        |||||| |||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||    
T  30208287 atcaatttcctccttattattaaaaaaacacttctttatgtgtgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctca 30208380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 1162137 - 1162043
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctcat 110  Q
    |||||||||||| ||||||||       || |||| |||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||    
T  1162137 atcaatttcctctttattattaaaaaaatatttctttatgtgtgtgtgaccaaacactttttctttagtcctatgaccatataagaatttctcat 1162043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 31333151 - 31333091
Alignment:
Q  47 ttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttct 107  Q
    |||| ||||||||||||||||||||||||||||||| || | ||| |||||||||||||||    
T  31333151 ttctttatgtgtgtgtgaccaaacactatttctttgatcatgtgaccatattagaatttct 31333091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 16782363 - 16782313
Alignment:
Q  56 tgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttc 106  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  16782363 tgtgtgtgtccaaacactatttatttggtcttatgatcatattagaatttc 16782313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 35179248 - 35179340
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctcat 110  Q
    ||||||||||| |||||||||       ||||||| |||| ||||||||||||||||| |||||||| |||  ||| ||||||||||||||||||    
T  35179248 atcaatttccttcttattattaaaaaaatacttctttatgcgtgtgtgaccaaacactttttctttgatcc--tgaccatattagaatttctcat 35179340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 40719915 - 40719821
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgt--gtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||||||||||||||||       ||||||| |||||||||  ||||||||||||| ||||||||||| |  || ||||||||||||||||    
T  40719915 atcaatttcctccttattatttaaaaaatacttctttatgtgtgtatgtgaccaaacactttttctttggtcatgcgaccatattagaatttctc 40719821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 5594871 - 5594962
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttct 107  Q
    |||| ||||||||||||||||       ||||||| ||| |||||||||| ||||||| |||||||| |||| ||| ||||||| |||||||    
T  5594871 atcactttcctccttattattaaaaaaatacttctttatatgtgtgtgactaaacactttttctttgatcctgtgaccatattaaaatttct 5594962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 34514569 - 34514625
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||||||||||||||||||||| ||||||| | |||  |||||| ||||||||    
T  34514569 tatgtgtgtgtgaccaaacactatttgtttggtcttgtgactatattaaaatttctc 34514625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 36132793 - 36132856
Alignment:
Q  47 ttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctcat 110  Q
    |||| ||||||||| | |||||||||| ||| ||||| | ||||| ||||||||||||||||||    
T  36132793 ttctttatgtgtgtataaccaaacactttttatttggccatatgaccatattagaatttctcat 36132856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 37872221 - 37872129
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||||||||||||||||       || || | |||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||    
T  37872221 atcaatttcctccttattattaaaaatatatttttttatgtgtgtgtgaccaaatactttttctttggtcctctgatcatattagaatttctc 37872129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 20524592 - 20524531
Alignment:
Q  47 ttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||| |||||||||||||||||||||| ||| |||| || | ||||||||||||||||||||    
T  20524592 ttctttatgtgtgtgtgaccaaacactttttatttgatcatgtgatcatattagaatttctc 20524531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 23145985 - 23145929
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    ||||||| |||||||||| ||| |||||||| |||||||| ||||||||||||||||    
T  23145985 tatgtgtatgtgaccaaatactttttctttgatcctatgaccatattagaatttctc 23145929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 42285298 - 42285350
Alignment:
Q  57 gtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctca 109  Q
    |||||||| |||||||| |||||||||| |||||| | |||||||||||||||    
T  42285298 gtgtgtgatcaaacactttttctttggttctatgaccctattagaatttctca 42285350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 16778261 - 16778319
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctcat 110  Q
    ||||||||| ||||||| |||| ||| ||||||||| ||  ||||||||||||||||||    
T  16778261 tatgtgtgtatgaccaagcactttttatttggtcctgtggccatattagaatttctcat 16778319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 22472136 - 22472083
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaattt 105  Q
    ||||||||||||| |||||||||||| ||||||  | ||| |||||||||||||    
T  22472136 tatgtgtgtgtgagcaaacactatttgtttggtgttgtgaccatattagaattt 22472083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 2008524 - 2008581
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctca 109  Q
    |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||    
T  2008524 tatgtgtgtgtggccaaacactatttctttggtcctgtgaccatattagaatttctca 2008581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 25199073 - 25199123
Alignment:
Q  58 tgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  25199073 tgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctc 25199123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 1994837 - 1994780
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctca 109  Q
    ||||||| |||||||||| ||||||||||||||| | ||| |||||||||||||||||    
T  1994837 tatgtgtctgtgaccaaatactatttctttggtcatgtgaccatattagaatttctca 1994780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 22831194 - 22831103
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttct 107  Q
    |||| ||||||||||||||||       ||||||| ||| |||||||||| ||||||| |||||||| |||| ||| ||||||| |||||||    
T  22831194 atcactttcctccttattattaaaaaaatacttctttatatgtgtgtgactaaacactttttctttgatcctgtgaccatattaaaatttct 22831103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 45805511 - 45805454
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctca 109  Q
    ||||||| |||||||||||||| ||| ||||||| | ||| |||||||||||||||||    
T  45805511 tatgtgtatgtgaccaaacactttttatttggtcatgtgaccatattagaatttctca 45805454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 22220334 - 22220389
Alignment:
Q  53 atgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    ||||||||||| ||||| ||| ||||||||||||| ||| ||||||| ||||||||    
T  22220334 atgtgtgtgtgtccaaatactttttctttggtcctgtgaccatattaaaatttctc 22220389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 44880383 - 44880433
Alignment:
Q  60 tgtgaccaaacactatttctttggtcctatgatcatattagaatttctcat 110  Q
    ||||| |||||||||||||||| || ||||||  |||||||||||||||||    
T  44880383 tgtgagcaaacactatttctttagttctatgaggatattagaatttctcat 44880433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 34060954 - 34061002
Alignment:
Q  60 tgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||||||||||||| ||||||| | ||| ||| ||||||||||||    
T  34060954 tgtgaccaaacactatttgtttggtcttgtgaccatgttagaatttctc 34061002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 39170957 - 39170905
Alignment:
Q  56 tgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||||||||||| ||||| |||| || | ||| ||||||||||||||||    
T  39170957 tgtgtgtgaccaaacattatttatttgatcttgtgaccatattagaatttctc 39170905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 46550696 - 46550632
Alignment:
Q  44 tacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    ||||||| |||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||    
T  46550696 tacttctttatgtgtgtgtgaccaaacactttttctttggtcttgtgaccatattagaatttctc 46550632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 41464786 - 41464731
Alignment:
Q  53 atgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    ||||||||||||||||||||||||||||| ||||| | | ||||||| ||||||||    
T  41464786 atgtgtgtgtgaccaaacactatttctttagtcctgtaaccatattataatttctc 41464731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 47541793 - 47541735
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctcat 110  Q
    |||||||||||||||||||||| |||||||| ||   ||| ||||||||||||||||||    
T  47541793 tatgtgtgtgtgaccaaacactttttctttgatctcgtgaccatattagaatttctcat 47541735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 15827116 - 15827052
Alignment:
Q  44 tacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||  |||||||| |||||||||||||||||||| ||||  | | ||||||||||||||||    
T  15827116 tacttcttaatgtgtgtatgaccaaacactatttctttagtcccgtaaccatattagaatttctc 15827052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 41942868 - 41942960
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||||||||||||||||       ||||||| ||||||||| |||||||||||| | ||||||||| | ||| ||||||||||||||||    
T  41942868 atcaatttcctccttattattaaaaaaatacttctttatgtgtgtatgaccaaacactttatctttggtcgtgtgaccatattagaatttctc 41942960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 16253154 - 16253210
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||||||||||||||||| |||||||| || | ||||||||||||||||||||    
T  16253154 tatgtgtgtgtgaccaaacactttttctttgatcatgtgatcatattagaatttctc 16253210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 24241602 - 24241658
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||||||||||||| ||| ||||||||||||| ||| ||||||||||||||||    
T  24241602 tatgtgtgtgtgaccaaatactttttctttggtcctgtgaccatattagaatttctc 24241658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 48506767 - 48506862
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctcatc 111  Q
    |||| ||||||||||||||||       ||||||| ||| ||||||||| |||||||||||||||| |||   ||| |||||||||||||||||||    
T  48506767 atcattttcctccttattattaaaaaaatacttctttatatgtgtgtgatcaaacactatttctttagtcaggtgaccatattagaatttctcatc 48506862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 34773410 - 34773345
Alignment:
Q  45 acttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctcat 110  Q
    |||||| | ||| ||||||| |||||||| ||||||||||||| | | ||||||||||||||||||    
T  34773410 acttctttttgtatgtgtgatcaaacactttttctttggtcctgtaaccatattagaatttctcat 34773345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 26764622 - 26764674
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatt 104  Q
    |||||||||||||||||||||||||| ||||| | | ||| ||||||||||||    
T  26764622 tatgtgtgtgtgaccaaacactatttgtttggccttgtgaccatattagaatt 26764674  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 8971517 - 8971609
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    ||||| |||||||||||||||       ||||| | ||||| ||| ||||| |||||| ||| ||||||||| ||| ||||||||||||||||    
T  8971517 atcaagttcctccttattattaaaaaaatacttatttatgtatgtatgaccgaacactttttttttggtcctgtgaccatattagaatttctc 8971609  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 15390457 - 15390402
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttct 107  Q
    ||||||| |||||||||||||||||| ||||||||  ||| ||||||||| |||||    
T  15390457 tatgtgtatgtgaccaaacactatttgtttggtcccgtgaccatattagactttct 15390402  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 21356922 - 21356970
Alignment:
Q  60 tgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    ||||||||||||||||||||||||||   ||  ||||||||||||||||    
T  21356922 tgtgaccaaacactatttctttggtctcgtggccatattagaatttctc 21356970  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 39744149 - 39744121
Alignment:
Q  54 tgtgtgtgtgaccaaacactatttctttg 82  Q
    |||||||||||||||||||||||||||||    
T  39744149 tgtgtgtgtgaccaaacactatttctttg 39744121  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 34480113 - 34480055
Alignment:
Q  50 tatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    ||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  34480113 tatatgtgtttgtgaccaaacactttttctttggtcctgtgaccatattagaatttctc 34480055  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 3870156 - 3870208
Alignment:
Q  56 tgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  3870156 tgtgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctc 3870208  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 36400972 - 36401036
Alignment:
Q  44 tacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    ||||||| |||||||||||| ||||||||| ||||||| ||||| ||| ||||||||||||||||    
T  36400972 tacttctttatgtgtgtgtgtccaaacactttttctttagtcctgtgaccatattagaatttctc 36401036  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 37721537 - 37721630
Alignment:
Q  16 atcaatttcctccttattattnnnnnnntacttctatatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctca 109  Q
    |||||||||||||||||||||       || |||| |||||||||||||||||||||| ||||||| |||   ||| |||||||||||||||||    
T  37721537 atcaatttcctccttattattaaaaaaataattctttatgtgtgtgtgaccaaacactttttctttagtctcgtgaccatattagaatttctca 37721630  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 9009115 - 9009163
Alignment:
Q  60 tgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||||||||||||| ||||||| | ||| ||||||||||||||||    
T  9009115 tgtgaccaaacactatttgtttggtcttgtgaccatattagaatttctc 9009163  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 29685526 - 29685559
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtc 85  Q
    |||||||||||||||||||||| |||||||||||    
T  29685526 tatgtgtgtgtgaccaaacactttttctttggtc 29685559  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 28733769 - 28733717
Alignment:
Q  53 atgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaattt 105  Q
    |||| ||| ||||||||||||||||||||| || | ||| |||||||||||||    
T  28733769 atgtatgtttgaccaaacactatttctttgatcatgtgaccatattagaattt 28733717  T

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Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 18042 - 17977
Alignment:
Q  44 tacttctatatgtgtgtgtgaccaaacac-tatttctttggtcctatgatcatattagaatttctc 108  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||  ||| ||||||||||||||||    
T  18042 tacttctttatgtgtgtgtgaccaaacacttttttctttggtcccgtgaccatattagaatttctc 17977  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 994872 - 994928
Alignment:
Q  52 tatgtgtgtgtgaccaaacactatttctttggtcctatgatcatattagaatttctc 108  Q
    |||||||||||||||||||||||||| ||||||| | ||| ||| ||||||||||||    
T  994872 tatgtgtgtgtgaccaaacactatttatttggtcttgtgaccatgttagaatttctc 994928  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 2141222 - 2141175
Alignment:
Q  58 tgtgtgaccaaacactatttctttggtcctatgatcatattagaattt 105  Q
    |||||||||||||||| |||||||| || ||||| |||||||||||||    
T  2141222 tgtgtgaccaaacactttttctttgatcatatgaccatattagaattt 2141175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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