View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_27 (Length: 481)
Name: NF21097_low_27
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_27 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 29 - 358
Target Start/End: Original strand, 52491072 - 52491400
Alignment:
| Q |
29 |
aacgggaagagaacacacattgtactttgaacgaaggtcaccggagagaggtgcgctaatcaacacacgacgaacgtttggtggggcggtgaaatgaacc |
128 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
52491072 |
aacgggaagagaacgcacgatgtactttgaacgaaggtcaccagagagaggtgcgctaatcaacacacgacggacgtttgatggggcggtgaaatgaacc |
52491171 |
T |
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| Q |
129 |
ttgcggctcttgtgacggctgcttgaaagaagaagaaacatggatgaatgaattgcagatctgaannnnnnnncgtattactcttctatgaaatcgtgag |
228 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52491172 |
ttgcggctcttgtgacagctgcttgaaagaagaagaaacgtggatgaatgaattgcagatctgaattttttt-cgtattactcttctatgaaatcgtgag |
52491270 |
T |
|
| Q |
229 |
gaagaataatggaagcaaagaagaaggaaaacagggtgttgttgtgctgcaattggggttgtaattgaaattgaagaaggaaataaattgaaggataatg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52491271 |
gaagaataatggaagcaaagaagaaggaaaacagggtgttgttgtgctgcaattagggttggaattgaaattgaagaaggaaataaattgaaggataatg |
52491370 |
T |
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| Q |
329 |
gaacgaagtgctgcaattgttgttgttcta |
358 |
Q |
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| T |
52491371 |
gaacgaagtgctgcaattgttgttgttcta |
52491400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 87 - 358
Target Start/End: Complemental strand, 21946304 - 21946020
Alignment:
| Q |
87 |
atcaacacacgacgaacgtttggtggggcggtgaaatgaaccttgcggctcttgtgacggctgcttgaaagaagaagaaacatggatgaatgaattgcag |
186 |
Q |
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|||||||||||||| |||||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
21946304 |
atcaacacacgacggacgtttggtgtggcggtaaaatgaaccttgcggctcttgcgacggatgcttgaaagaagaagaaacatggctgaatgaattgcat |
21946205 |
T |
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| Q |
187 |
atctgaa-nnnnnnnncgtattactcttctatgaaatcgtgaggaagaataatggaagcaaagaagaaggaaaacaggg---tgttgttgtgctgcaatt |
282 |
Q |
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| T |
21946204 |
atctgaatttttttttcttatttctcttctatggagttgtgagaaagaataatggaagcaaagaagaa-gaaaacaaggtgttgttgttgtactgcaatt |
21946106 |
T |
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| Q |
283 |
ggggttgtaattgaaattgaagaaggaaataaa-------ttgaaggataatggaac---gaagtgctgcaattgttgttgttcta |
358 |
Q |
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| T |
21946105 |
ggggttggaattgaaattaaagaaggaaataaattgaaatttgaaggataatggaacctggaagtgctgcaattgttgttgttcta |
21946020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 5404332 - 5404205
Alignment:
| Q |
29 |
aacgggaagagaacacacattgtactttgaacgaaggtcaccggagagaggtgcgctaatcaacacacgacgaacgtttggtggggcggtgaaatgaacc |
128 |
Q |
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|||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||| ||| |||||||||||||||| || |
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| T |
5404332 |
aacgggaagagaacgcacgttgtactttgaacggaggtcaccggaaagaggtgcgctcatcaacacacgacggacgcttgatggggcggtgaaatgagcc |
5404233 |
T |
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| Q |
129 |
ttgcggctcttgtgacggctgcttgaaa |
156 |
Q |
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| T |
5404232 |
ttgcggctcttgcgacggctgcttgaaa |
5404205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 30927076 - 30927232
Alignment:
| Q |
29 |
aacgggaagagaacacacattgtactttgaacgaaggtcaccggagagaggtgcgctaatcaacacacgacgaacgtttggtggggcggtgaaatgaacc |
128 |
Q |
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||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||| |||||||||||||| || || | | ||| | || |
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| T |
30927076 |
aacgggaagagaatgcacgttgtactttgaaagaaggtcaccggagagaggttcgctcatcaacacacgacggacttt--gaaagaaggtca------cc |
30927167 |
T |
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| Q |
129 |
ttgcggctcttgtgacggctgcttgaaagaagaagaaacatggatgaatgaattgcagatctgaa |
193 |
Q |
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| T |
30927168 |
ttgcggctcttccgacggttgcttgaaagaagaagaaacatggatgaatgaattgcatatctgaa |
30927232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 36337278 - 36337331
Alignment:
| Q |
279 |
aattggggttgtaattgaaattgaagaaggaaataaattgaaggataatggaac |
332 |
Q |
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| T |
36337278 |
aattggggctggaattgaaattgaagaaggaaataaattgaagaataatggaac |
36337331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 357
Target Start/End: Original strand, 30927247 - 30927364
Alignment:
| Q |
235 |
taatggaagcaaagaagaaggaaaacag--ggtgttgttgtgctgcaattggggttgtaattgaaattgaagaaggaaataaattgaaggataatggaac |
332 |
Q |
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|||||||||||||||||||| ||| || | || |||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
30927247 |
taatggaagcaaagaagaagaaaataagatgttgatgttgtactgcaattggggttggaattgaaattgaa----------atttgaaggataatggaac |
30927336 |
T |
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| Q |
333 |
---gaagtgctgcaattgttgttgttct |
357 |
Q |
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||||||||||||||||||||||||| |
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| T |
30927337 |
ctggaagtgctgcaattgttgttgttct |
30927364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 43242 - 43298
Alignment:
| Q |
300 |
tgaagaaggaaataaattgaaggataatggaacgaagtgctgcaattgttgttgttcta |
358 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
43242 |
tgaagaaggaaataaattgaagaataatggaac--cttgctgaaattgttgttgttcta |
43298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 27444119 - 27444063
Alignment:
| Q |
300 |
tgaagaaggaaataaattgaaggataatggaacgaagtgctgcaattgttgttgttcta |
358 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |
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| T |
27444119 |
tgaagaaggaaataaattgaagaataatggaac--cttgctgaaattgttgttgttcta |
27444063 |
T |
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Back To:
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