View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_29 (Length: 465)
Name: NF21097_low_29
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Complemental strand, 4878531 - 4878088
Alignment:
| Q |
17 |
catatgttgcatataccctcataagctgtttattggacacttaattccaatcataaataggtacatggaatcgagatcacggtagcggacaaaatattga |
116 |
Q |
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| T |
4878531 |
catatgttgcatataccctcataagctgtttattggaaacttaattccaatcataaataggtacatggaatcgagatcacggtagcgaacaaaatattga |
4878432 |
T |
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| Q |
117 |
actagtatataagagtggatagaaaagaatacaccggtacatgataaatgtattctagcattttgcaaatttgtgcatatgcagtttttggcttttgaga |
216 |
Q |
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| T |
4878431 |
actagtatataagagtggatagaaaagaatacaccggtacatgataaatgtattctagcattttgcaaatttgtgcatatgcagtttttggcttttgaga |
4878332 |
T |
|
| Q |
217 |
ataatgtttagatttcttttcaagtagctctataccaaaattaaatttctgcactatctgttgtaatagatttcaccatttaaactaatggtttattggt |
316 |
Q |
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| T |
4878331 |
ataatgtttagatttcttttcaagtagctctataccaaaattaaatttctgcactatctgttgtaatagatttcaccatttaaactaatggtttattggt |
4878232 |
T |
|
| Q |
317 |
tttatgtcaattttgatgttttaacacagtatgagggtgataatacattccaatttttggagcctatatcaagtaaaactatgaaatgtcaacaaactat |
416 |
Q |
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| T |
4878231 |
tttatgtcaattttgatgttttaacacagtatgagggtgataatccattccaatttttggagcctatatcaagtaaaactatgaaatgtcaacaaactat |
4878132 |
T |
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| Q |
417 |
ttataaacttaactcatcacaactcaactatcatttagtagata |
460 |
Q |
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| T |
4878131 |
ttataaacttaactcatcacaactcaactatcatttagtagata |
4878088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 12534044 - 12534215
Alignment:
| Q |
108 |
aaatattgaactagtatataagagtggatagaaaagaatacaccggtacatgataaatgtattctagcattttgcaaatttgtgcatatgcagtttttgg |
207 |
Q |
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|||||||||| |||||||||||| |||||| || |||||| | ||| ||| |||||||||||| | ||||||||||||||||||||||||| ||||| | |
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| T |
12534044 |
aaatattgaattagtatataagaatggataaaatagaatattctggtccataataaatgtattccaccattttgcaaatttgtgcatatgcacttttttg |
12534143 |
T |
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| Q |
208 |
cttttgagaataatgtttagatttcttttcaagtagctct-ataccaaaattaaatttctgcactatctgtt |
278 |
Q |
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|| || ||| | ||||| |||||| |||||| |||||| | |||||||||||| ||||||||||||| |||| |
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| T |
12534144 |
ctgttaagagttatgttcagatttgttttcatgtagctgtgataccaaaattatatttctgcactatttgtt |
12534215 |
T |
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