View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_31 (Length: 461)
Name: NF21097_low_31
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 445
Target Start/End: Original strand, 35042947 - 35043372
Alignment:
| Q |
20 |
agctgttagtacttcaattttcagttaacagatnnnnnnnccttcactctccatagcaagcactaaccaaagaaacacttaccaagatatgtctacttct |
119 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35042947 |
agctgttagtacttcaattttcagttaacagataaaaaaaccttcactctccatagcaagcactaaccaaagaaacacttaccaagatatgtctacttct |
35043046 |
T |
|
| Q |
120 |
actcgtggcctcatcatatctctcatgattttgtccattttttcacccaatgtgaatgtgagttttcttctcttttttctccccacacccaaaaattcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043047 |
actcgtggcctcatcatatctctcatgattttgtccattttttcacccaatgtgaatgtgagttttcttctcttttttctccccacacccaaaaattcaa |
35043146 |
T |
|
| Q |
220 |
ataaattgtataaaaacatgtagttgaaatttataatttttcatgattaggatgtaaatggagctgcagataccatgcaaatgatgatgatgaatgaagg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043147 |
ataaattgtataaaaacatgtagttgaaatttataatttttcatgattaggaggtaaatggagctgcagataccatgcaaatgatgatgatgaatgaagg |
35043246 |
T |
|
| Q |
320 |
caggaggaaattgggtgctttccagatatgtgcaatgtgcacttgctgtggtggtgccaaagggttgtgcttggcctctccttgttgctatgtcttcaca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043247 |
caggaggaaattgggtgctttccagatatgtgcaatgtgcacttgctgtggtggtgccaaagggttgtgcttggcctctccttgttgctatgtcttcaca |
35043346 |
T |
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| Q |
420 |
tgtaaccttccaaataagccttttgg |
445 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35043347 |
tgtaaccttccaaataagccttttgg |
35043372 |
T |
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