View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_low_34 (Length: 454)

Name: NF21097_low_34
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21097_low_34
NF21097_low_34
[»] chr5 (3 HSPs)
chr5 (20-420)||(10117660-10118053)
chr5 (311-421)||(41748270-41748380)
chr5 (322-423)||(34082488-34082589)
[»] chr4 (1 HSPs)
chr4 (290-423)||(18931260-18931391)
[»] scaffold0236 (1 HSPs)
scaffold0236 (311-420)||(12684-12793)
[»] chr6 (2 HSPs)
chr6 (296-383)||(14560552-14560639)
chr6 (311-375)||(6609551-6609615)
[»] chr7 (2 HSPs)
chr7 (290-366)||(246064-246140)
chr7 (325-374)||(38042084-38042133)
[»] chr1 (1 HSPs)
chr1 (338-383)||(10008580-10008625)
[»] chr2 (1 HSPs)
chr2 (338-375)||(25553251-25553288)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 10117660 - 10118053
Alignment:
Q  20 cttttattaatcctttcaaccttaattattgtttagagaaaaagacagtatatgataagcgtgaatctatatgattacgtgagatgcaagataggaactg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10117660 cttttattaatcctttcaaccttaattattgtttagagaaaaagacagtatatgataagcgtgaatctatatgattacgtgagatgcaagataggaactg 10117759  T
Q  120 tgaaaaggaaaatacaagagatagaaaactacatat-aaaacattggttgaatttcgacgtatatattatgcccaattgcttttcgtaatggtcaacaaa 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10117760 tgaaaaggaaaatacaagagatagaaaactacatataaaaacattggttgaatttcgacgtatatattatgcccaattgcttttcgtaatggtcaacata 10117859  T
Q  219 ttctaacaagatccaaagacatttgttggtttggaattggatcgtgtgcgttcttagaatcttaggtagggacttgcatcctctccatcgacaattttac 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||| |||||||||| |||||| || ||    
T  10117860 ttctaacaagatccaaagacatttgttggtttggaattggatcgtgt------ttagaatcttaggtagggacttggatcctctccagcgacaa-ttcac 10117952  T
Q  319 tggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnnnnttgaatggagaggatctcattggactc 418  Q
    | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||       ||||| |||||||||||||||||||||    
T  10117953 t-gatgctccgcagtgaaaatctgaacctttaattacccttttaataattataaatgcttgcaattaaaaaaattgaacggagaggatctcattggactc 10118051  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 311 - 421
Target Start/End: Original strand, 41748270 - 41748380
Alignment:
Q  311 aattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnnnnttgaatggagaggatctca 410  Q
    ||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||       |||||||||||||||||||    
T  41748270 aatttcactggatgctctggagtgaaaatctaaacctttaattacccttttaataattataaatgcttgcaattaaaaaaattgaatggagaggatctca 41748369  T
Q  411 ttggactctcc 421  Q
     ||||||||||    
T  41748370 ctggactctcc 41748380  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 423
Target Start/End: Original strand, 34082488 - 34082589
Alignment:
Q  322 atgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnnnnttgaatggagaggatctcattggactctcc 421  Q
    ||||||| | |||||||||| ||| |||||||||||||||||||||||| |||| ||||||||       ||||| ||||| ||||| | ||||||||||    
T  34082488 atgctctacggtgaaaatctaaacctttaattacccttttaataattattaatgcttgcaattaaaaaaattgaacggagatgatcttactggactctcc 34082587  T
Q  422 ag 423  Q
    ||    
T  34082588 ag 34082589  T

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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 18931391 - 18931260
Alignment:
Q  290 acttgcatcctctccatcgacaattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnn 389  Q
    ||||| ||||||||||  || ||||| ||| ||| ||||  ||||||||||||||| |||||||| |||||||||||||||||||| ||||||||         
T  18931391 acttggatcctctccagtgaaaatttcactagatactct--agtgaaaatctgaacttttaattatccttttaataattataaatgcttgcaattaaaaa 18931294  T
Q  390 nnttgaatggagaggatctcattggactctccag 423  Q
      ||||||||||||||||||| || |||||||||    
T  18931293 aattgaatggagaggatctcactgaactctccag 18931260  T

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Target: scaffold0236 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 420
Target Start/End: Original strand, 12684 - 12793
Alignment:
Q  311 aattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnnnnttgaatggagaggatctca 410  Q
    ||||| ||||||| |||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||        || ||||||||||||||||    
T  12684 aatttcactggatactctgcagtgtagatctgaacctttaattacccttttaataattataaatgtttgaaatgaaaaaaattaaatggagaggatctca 12783  T
Q  411 ttggactctc 420  Q
    ||||| ||||    
T  12784 ttggattctc 12793  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 14560639 - 14560552
Alignment:
Q  296 atcctctccatcgacaattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaat 383  Q
    ||||||||||  || ||||| ||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||  |||||||    
T  14560639 atcctctccagtgagaatttcactggatgctctgcagtgaaaatctaaacttttaattacctttttaataattataaatacttgcaat 14560552  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 375
Target Start/End: Original strand, 6609551 - 6609615
Alignment:
Q  311 aattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatg 375  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||    
T  6609551 aattttactggatgctctgcagtgtagatctgaacctttaattacccttttcataattataaatg 6609615  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 246064 - 246140
Alignment:
Q  290 acttgcatcctctccatcgacaattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataa 366  Q
    ||||| |||||||||   || ||||| ||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  246064 acttggatcctctccgatgaaaatttcactggatgctctgcagtgaaaatctaaacctttaattacctttttaataa 246140  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 38042133 - 38042084
Alignment:
Q  325 ctctgcagtgaaaatctgaacatttaattacccttttaataattataaat 374  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  38042133 ctctgcagtgaaaatctaaacttttaactacccttttaataattataaat 38042084  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 10008625 - 10008580
Alignment:
Q  338 atctgaacatttaattacccttttaataattataaatgtttgcaat 383  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||    
T  10008625 atctgaaactttaattaccctcttaataattataaatgtttgcaat 10008580  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 25553251 - 25553288
Alignment:
Q  338 atctgaacatttaattacccttttaataattataaatg 375  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  25553251 atctaaacctttaattacccttttaataattataaatg 25553288  T

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