View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_35 (Length: 449)
Name: NF21097_low_35
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 1876719 - 1876299
Alignment:
| Q |
1 |
gtatgcatggcccaggagcaaaagccaacagaattgaaataattcctaccaactgtagacattactaacaaagggaaaattgataaataaaacatttccg |
100 |
Q |
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| T |
1876719 |
gtatgcatggcccaggagcaaaagccaacagaattgaaataattcctaccaactgtagacattactaacaaagggaaaattgataaatagaacatttccg |
1876620 |
T |
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| Q |
101 |
aatatatcatagttttaaattgcggttgcagatacattgcattagcgtgtttttaatattgcaggacattacaaactaatgtagttcgcaatttcaatac |
200 |
Q |
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| T |
1876619 |
aatatatcatagttttaaattgcggttgcagatacattgcattagcgtgtttttaatattgcaggacattacaaactaatgtagttcgcaatttcaatac |
1876520 |
T |
|
| Q |
201 |
aaatcaatctttaaaataatacacataaaaaagtagaccaaaatgaaagataagtcgacaacaaactgcactccaattttaattgcattgcaattgcaaa |
300 |
Q |
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| T |
1876519 |
aaatcaatctttaaaataatacacataaaaaagtagaccaaaatgaaagataagtcgacaacaaactgcgctccaattttaat-----------tgcaaa |
1876431 |
T |
|
| Q |
301 |
gacctcaagaactattatgttattgttgcagccacttttacaatactaaaatagataactaataacaacaaacattttattgaagacttttcagagctac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1876430 |
gacctcaagaactattatgttattgttgcagccacttttacaatactaaaatagataactaataacaacaaacattttattgaagacttttcagagctac |
1876331 |
T |
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| Q |
401 |
atttgctaggtacttttatggggatttggctt |
432 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1876330 |
atttgctaggtacttttatggggatttggctt |
1876299 |
T |
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