View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_low_36 (Length: 447)

Name: NF21097_low_36
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21097_low_36
NF21097_low_36
[»] chr7 (19 HSPs)
chr7 (18-435)||(8628967-8629384)
chr7 (18-183)||(8585274-8585439)
chr7 (17-185)||(8667853-8668021)
chr7 (18-183)||(8654885-8655050)
chr7 (18-183)||(13333024-13333189)
chr7 (18-183)||(10493942-10494107)
chr7 (31-187)||(6789960-6790116)
chr7 (17-164)||(8671217-8671364)
chr7 (18-181)||(8659798-8659961)
chr7 (18-183)||(1301899-1302064)
chr7 (21-186)||(3147710-3147875)
chr7 (99-184)||(8582216-8582301)
chr7 (51-177)||(17268407-17268533)
chr7 (78-183)||(8546127-8546232)
chr7 (41-183)||(8647335-8647474)
chr7 (107-182)||(8588034-8588109)
chr7 (51-186)||(17260709-17260844)
chr7 (21-176)||(27830450-27830605)
chr7 (122-184)||(8576865-8576927)
[»] chr4 (3 HSPs)
chr4 (17-187)||(9335455-9335625)
chr4 (52-186)||(35132915-35133049)
chr4 (51-183)||(30775720-30775852)
[»] chr2 (10 HSPs)
chr2 (21-179)||(16661564-16661722)
chr2 (43-183)||(16657085-16657225)
chr2 (32-187)||(12235138-12235293)
chr2 (103-183)||(43625930-43626010)
chr2 (99-176)||(7542742-7542819)
chr2 (54-183)||(11999865-11999994)
chr2 (130-183)||(12244974-12245027)
chr2 (18-177)||(12258155-12258314)
chr2 (140-183)||(39373417-39373460)
chr2 (39-182)||(14703864-14704007)
[»] chr1 (4 HSPs)
chr1 (21-182)||(34466362-34466523)
chr1 (41-183)||(4678126-4678268)
chr1 (18-187)||(15595474-15595641)
chr1 (99-169)||(52549102-52549172)
[»] chr5 (2 HSPs)
chr5 (21-183)||(28220389-28220551)
chr5 (68-165)||(42555530-42555627)
[»] chr8 (1 HSPs)
chr8 (21-183)||(43745285-43745447)
[»] chr6 (3 HSPs)
chr6 (21-186)||(28911020-28911185)
chr6 (60-176)||(11171047-11171163)
chr6 (60-176)||(11276431-11276547)


Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 8628967 - 8629384
Alignment:
Q  18 gatatttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaaca 117  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8628967 gatatttcctcagcacataggttcttctcttgacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaaca 8629066  T
Q  118 tgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaataactcaacttgttaagtgttaacactctcgtca 217  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  8629067 tgatatccttttgaacaacaggatcactaaacttcctaccaattaacctcttggcatctgaaaatataactcaaattgttaagtgttaacactctcgtca 8629166  T
Q  218 ttcatttgttctgctaacatagatataagcattaatataaattaatgtttgcaaatgtgatataagttcgaaaattaggatttttgatgttattgatact 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8629167 ttcatttgttctgctaacatagatataagcattaatataaattaatgtttgcaaatgtgatataagttcgaaaattaggatttttgatgttattgatact 8629266  T
Q  318 aactacaggtacaacaaatttgatggaggttgcatcctccgcattttaccacagttctaagttgcagtctgaaaccattaaaggaggccacaatatcatg 417  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8629267 aactacaggtataacaaatttgatggaggttgcatcctccgcattttaccacagttctaagttgcagtctgaaaccattaaatgaggccacaatatcatg 8629366  T
Q  418 attataaaagtctctgct 435  Q
    ||||||||||||||||||    
T  8629367 attataaaagtctctgct 8629384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 8585439 - 8585274
Alignment:
Q  18 gatatttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaaca 117  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  8585439 gatatttcctcagcacataggttcttttcttgacccttgtacttaacagtaatcataggtttgtcattaacaccagagataaccttgaatggccacaaca 8585340  T
Q  118 tgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    | ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8585339 ttatatcattttgaacaacgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 8585274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 8667853 - 8668021
Alignment:
Q  17 agatatttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaac 116  Q
    |||||||||||| ||||| | || |||||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||    
T  8667853 agatatttcctcagcacaaaagtgcttctcttgacccttgtacttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaac 8667952  T
Q  117 atgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaata 185  Q
    |  |||||  ||||||||| ||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  8667953 aatatatctctttgaacaacggggtcactaaacttcctaccaattaacctcttagcatctgcaaaaata 8668021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 8654885 - 8655050
Alignment:
Q  18 gatatttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaaca 117  Q
    ||||||||||| ||||| |  | |||||||| ||| ||||||||||||| |||||| || |||||||||| ||||||| ||||| |||||||||| ||||    
T  8654885 gatatttcctcagcacaaaattgcttctcttgacctttgtacttaacagtaatcatgggtttgtcattaacaccagaagtaaccatgaatggccacaaca 8654984  T
Q  118 tgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||    
T  8654985 tgatatccttttgaacaataggatcactatacttcctaccaattaacctcttagcatctaaaaaaa 8655050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 13333189 - 13333024
Alignment:
Q  18 gatatttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaaca 117  Q
    ||||||||||| ||||| | || |||||||| ||||||| ||||| | | ||||||||||||||| || | ||||||| |||||||||||||||| ||||    
T  13333189 gatatttcctcggcacaaaagtgcttctcttgacccttgcacttagcggtaatcataggcttgtcgttgacaccagaagtaaccttgaatggccacaaca 13333090  T
Q  118 tgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    | ||||| ||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||    
T  13333089 ttatatcattttgaacaaccggatcactaaacttcctaccaattaacctcttagcatctgaaaaaa 13333024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 10494107 - 10493942
Alignment:
Q  18 gatatttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaaca 117  Q
    ||||||||||| ||||| | || |||||||| ||||||||||||| | | ||||||||| |||||||| | ||| ||| |||||||||||||||| ||||    
T  10494107 gatatttcctcggcacaaaagtgcttctcttgacccttgtacttagcggtaatcataggtttgtcattgacacctgaagtaaccttgaatggccacaaca 10494008  T
Q  118 tgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    | ||||| ||||||||||  ||||||||||||||||| |||||||||||||| |||||| ||||||    
T  10494007 ttatatcgttttgaacaaccggatcactaaacttcctgccaattaacctcttagcatctaaaaaaa 10493942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 6789960 - 6790116
Alignment:
Q  31 cacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttg 130  Q
    ||||||| | |||||| | |||||| |||| |||| ||||||| ||||||||||| |  |||| ||| |||||||||||||| ||||| ||||| |||||    
T  6789960 cacatagttgcttctcctcacccttatactcaacaacaatcatgggcttgtcattgacgccagcaatgaccttgaatggccaaaacatcatatcattttg 6790059  T
Q  131 aacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaataac 187  Q
    |||||  | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  6790060 aacaacagaatcactaaacttcctaccaattaacctcttagcatctgaaaaaataac 6790116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 8671364 - 8671217
Alignment:
Q  17 agatatttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaac 116  Q
    |||||||||||| ||||| |  | |||||||  ||| | |||||| |||| ||||||||| |||||||||| |||||||||||||||||||||||| |||    
T  8671364 agatatttcctcagcacaaaattgcttctctagaccttcgtacttgacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaac 8671265  T
Q  117 atgatatccttttgaacaatgggatcactaaacttcctaccaattaac 164  Q
    |  |||||  |||||||||  |||||||||||||||||||||||||||    
T  8671264 aatatatctctttgaacaaccggatcactaaacttcctaccaattaac 8671217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 8659798 - 8659961
Alignment:
Q  18 gatatttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaaca 117  Q
    ||||||||||||||||| | || |||||| | ||||||||||| ||||  ||||||  | ||||| || | |||||  ||||||||||||||||| ||||    
T  8659798 gatatttcctccgcacaaaagtgcttctcctgacccttgtactgaacattaatcatgagtttgtcgttcacaccagcgataaccttgaatggccacaaca 8659897  T
Q  118 tgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaa 181  Q
    | || || ||||||||||  | |||||||||||||||||||||||| ||||| |||||||||||    
T  8659898 tcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctctttgcatctgaaaa 8659961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 1301899 - 1302064
Alignment:
Q  18 gatatttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaaca 117  Q
    |||||||||||| | || | || |||||| | |||||||||||||||| ||||||  || |||||||| | ||| |  || |||||||||||||| ||||    
T  1301899 gatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatcacgggtttgtcattcacaccggcgatgaccttgaatggccacaaca 1301998  T
Q  118 tgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    | || || ||||||||||  | |||||||||||||||||||||||| ||||| |||||||||||||    
T  1301999 tcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctcttagcatctgaaaaaa 1302064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 3147710 - 3147875
Alignment:
Q  21 atttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatga 120  Q
    ||||| || |||||||||| |||||| |  |||||| ||||||| | |||||| || |||||||| |  ||  |||| |||||||||||||| ||||| |    
T  3147710 atttcttcagcacataggtgcttctcctgtcccttgcacttaaccgaaatcatgggtttgtcattcactccgcaaatgaccttgaatggccacaacatca 3147809  T
Q  121 tatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaataa 186  Q
    |||| ||||||||||  | ||||| |||||||||||||||||||||||| |||||| | |||||||    
T  3147810 tatcattttgaacaacagaatcaccaaacttcctaccaattaacctctttgcatctaacaaaataa 3147875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 8582216 - 8582301
Alignment:
Q  99 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaat 184  Q
    |||||||| ||||| ||| ||||||||||||||||||||| ||||||| | ||||| |||||||||||||| ||||||||||||||    
T  8582216 accttgaagggccacaacttgatatccttttgaacaatggaatcactatatttccttccaattaacctctttgcatctgaaaaaat 8582301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 17268407 - 17268533
Alignment:
Q  51 cccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaact 150  Q
    ||||||||||| |  | |||||| || |||||||| | | | | ||| ||||||||||||||  |||| ||||| ||||| || |  |||||||||||||    
T  17268407 cccttgtacttgagggaaatcattggtttgtcattcatatccgcaatgaccttgaatggccacgacattatatctttttggaccacaggatcactaaact 17268506  T
Q  151 tcctaccaattaacctcttggcatctg 177  Q
    ||||||||||||  ||||| |||||||    
T  17268507 tcctaccaattagtctcttagcatctg 17268533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 8546127 - 8546232
Alignment:
Q  78 ttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctg 177  Q
    |||||||||| ||| ||||| ||||| || ||||| ||||  | ||| || ||||||| || ||||||| | ||||| |||||||||||||| |||||||    
T  8546127 ttgtcattaacaccggaaatgaccttaaagggccacaacagtagatcattctgaacaaaggaatcactatatttccttccaattaacctctttgcatctg 8546226  T
Q  178 aaaaaa 183  Q
     |||||    
T  8546227 caaaaa 8546232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 183
Target Start/End: Original strand, 8647335 - 8647474
Alignment:
Q  41 cttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatggga 140  Q
    |||||||| ||||||||| ||||||  |||||| || |||||||| |  |||   || |||||||||||||| ||| |  |||| || |||||||  | |    
T  8647335 cttctcttcacccttgtatttaacaataatcatgggtttgtcattcacccca---atgaccttgaatggccacaacttcttatcattctgaacaacagaa 8647431  T
Q  141 tcactaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    |||  |||||||||||| ||||||||||| ||||||| |||||    
T  8647432 tcaaaaaacttcctaccgattaacctcttagcatctggaaaaa 8647474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 8588034 - 8588109
Alignment:
Q  107 tggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaa 182  Q
    |||||| ||||| ||||| ||||||||||||| || ||||||||||| ||  |  |||||||| ||||||||||||    
T  8588034 tggccacaacatcatatcattttgaacaatggaataactaaacttcccacagaccaacctctttgcatctgaaaaa 8588109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 17260709 - 17260844
Alignment:
Q  51 cccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaact 150  Q
    ||||||||||| |  | |||||| || |||||||| | | | | ||| ||||||||||||||  |||| ||||| ||||| || |  |||||||||||||    
T  17260709 cccttgtacttgagggaaatcattggtttgtcattcatatccgcaatgaccttgaatggccacgacattatatctttttggaccacaggatcactaaact 17260808  T
Q  151 tcctaccaattaacctcttggcatctgaaaaaataa 186  Q
    ||||||||| ||  ||||| |||||||  |||||||    
T  17260809 tcctaccaactagtctcttagcatctgtcaaaataa 17260844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 27830605 - 27830450
Alignment:
Q  21 atttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatga 120  Q
    |||||||||||||||| ||  ||||| | || ||||||||||||| ||| ||| || ||||  || | | ||| ||| || |||||| |||| ||  | |    
T  27830605 atttcctccgcacataagtgtttctcctgactcttgtacttaacaacaaacatgggtttgttgtttacatcagtaatgactttgaatagccacaagttta 27830506  T
Q  121 tatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatct 176  Q
    |||| ||||||||||    ||| || ||||||||||||||||||||||| ||||||    
T  27830505 tatctttttgaacaacatcatcgctgaacttcctaccaattaacctcttagcatct 27830450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 8576865 - 8576927
Alignment:
Q  122 atccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaat 184  Q
    |||||| |||||||||| ||||||| | ||||| |||||||||||||| | ||||| ||||||    
T  8576865 atccttctgaacaatggaatcactatatttccttccaattaacctctttgtatctgtaaaaat 8576927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 9335625 - 9335455
Alignment:
Q  17 agatatttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaac 116  Q
    |||||||||||| ||||| | || |||||||| ||||||||| ||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||    
T  9335625 agatatttcctcagcacaaaagtgcttctcttgacccttgtagttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaac 9335526  T
Q  117 atgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaataac 187  Q
    |  |||||  |||||||||   |||||||||||||||||||| |||| ||||| ||||||| |||||||||    
T  9335525 aatatatctctttgaacaaccagatcactaaacttcctaccagttaatctcttagcatctgcaaaaataac 9335455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 35132915 - 35133049
Alignment:
Q  52 ccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaactt 151  Q
    ||||||||||||| | |||||| || |||||||| | ||| | | | |||||||||||||| | ||  ||||| | ||||||||| ||||||||||||||    
T  35132915 ccttgtacttaaccgtaatcatgggtttgtcatttacaccggcagtgaccttgaatggccatagcagtatatcatcttgaacaataggatcactaaactt 35133014  T
Q  152 cctaccaattaacctcttggcatctgaaaaaataa 186  Q
    ||||||||||||||| || ||||||||||||||||    
T  35133015 cctaccaattaaccttttagcatctgaaaaaataa 35133049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 51 - 183
Target Start/End: Original strand, 30775720 - 30775852
Alignment:
Q  51 cccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaact 150  Q
    |||||| ||||||  | |||||| || |||||||||| |||||||| ||||||||||||||| ||||  ||||| ||||||||||  || || ||||| |    
T  30775720 cccttgaacttaagggaaatcatgggtttgtcattaacaccagaaacaaccttgaatggccacaacaaaatatctttttgaacaacagggtcgctaaatt 30775819  T
Q  151 tcctaccaattaacctcttggcatctgaaaaaa 183  Q
    |||||||||||||||| || |||||||||||||    
T  30775820 tcctaccaattaaccttttagcatctgaaaaaa 30775852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 16661722 - 16661564
Alignment:
Q  21 atttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatga 120  Q
    |||||||| ||||| |||  |||||| | ||||||||||||||||  |||| |||| |||||||||| ||||| |||||||||||| ||||| ||||  |    
T  16661722 atttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagta 16661623  T
Q  121 tatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaa 179  Q
    |||| |||||||||| ||| |||||||| |||||||||||||||||||| |||||||||    
T  16661622 tatctttttgaacaacggggtcactaaatttcctaccaattaacctcttagcatctgaa 16661564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 16657225 - 16657085
Alignment:
Q  43 tctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatc 142  Q
    |||||| |||||| |||| || || |||||| || |||||||| |  || | ||| |||||||||||||| || |||||||| ||||||||||  |||||    
T  16657225 tctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatc 16657126  T
Q  143 actaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    ||||||||||||||| |||||||| || |||||||||||||    
T  16657125 actaaacttcctaccgattaaccttttagcatctgaaaaaa 16657085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 12235138 - 12235293
Alignment:
Q  32 acataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttga 131  Q
    |||||| | |||||||  |||||||||||| |||  |||||| || |||||||| | ||||| |   |||||||||||||| ||||| | ||| | ||||    
T  12235138 acatagctgcttctctcgacccttgtacttgacaataatcatgggtttgtcattgacaccagcagcgaccttgaatggccacaacatcacatcatcttga 12235237  T
Q  132 acaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaataac 187  Q
    ||||   ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  12235238 acaacttgatcactaaacttcctaccaattaacctcttagcatctgaaaaattaac 12235293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 43625930 - 43626010
Alignment:
Q  103 tgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    |||||||||| ||||||||||| ||||||||||  | |||||||||||||||||| ||||||||||| ||||||| |||||    
T  43625930 tgaatggccacaacatgatatcattttgaacaacagaatcactaaacttcctaccgattaacctcttagcatctggaaaaa 43626010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 7542742 - 7542819
Alignment:
Q  99 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatct 176  Q
    |||||||||||||| ||||  ||||| | ||||||||  |||||||||||||||||||||||||||||||| ||||||    
T  7542742 accttgaatggccataacagtatatcatcttgaacaacaggatcactaaacttcctaccaattaacctcttagcatct 7542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 11999865 - 11999994
Alignment:
Q  54 ttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcc 153  Q
    ||||||||||||| ||| || || |||||||| | | ||| | | |||||||||||||| ||||    ||| | ||||||||   |||||||||||||||    
T  11999865 ttgtacttaacagtaattattggtttgtcattgacatcagcagtgaccttgaatggccataacaatccatcatcttgaacaacaagatcactaaacttcc 11999964  T
Q  154 taccaattaacctcttggcatctgaaaaaa 183  Q
     ||||||||||||||| |||||||||||||    
T  11999965 aaccaattaacctcttagcatctgaaaaaa 11999994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 12245027 - 12244974
Alignment:
Q  130 gaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||    
T  12245027 gaacaataggatcactaaacttcctaccaattaatctcttagcatctgaaaaaa 12244974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 12258314 - 12258155
Alignment:
Q  18 gatatttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaaca 117  Q
    |||| |||||| ||||| || | |||||||| |  ||||||||| || | |||||| || ||| |||| | ||||| | | || || |||||||| ||||    
T  12258314 gatacttcctcggcacaaagctgcttctcttgattcttgtactttaccgtaatcatgggtttgccattgacaccagcagtgactttaaatggccacaaca 12258215  T
Q  118 tgatatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctg 177  Q
    | ||||| | |||||| |   ||||||||||||||||||||||||||||||| |||||||    
T  12258214 ttatatcatcttgaactacttgatcactaaacttcctaccaattaacctcttagcatctg 12258155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 39373417 - 39373460
Alignment:
Q  140 atcactaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  39373417 atcattaaacttcctaccaattaacctcttagcatctgaaaaaa 39373460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 182
Target Start/End: Original strand, 14703864 - 14704007
Alignment:
Q  39 ttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgg 138  Q
    |||||||| | | ||||||||||||| | |||||| || |||||||  |  |||| | | ||||| |||||||| || |  ||||| | ||||||||| |    
T  14703864 ttcttctcctgatccttgtacttaaccgtaatcatgggtttgtcatcgactccagcagtgaccttaaatggccataaaagtatatcatcttgaacaatag 14703963  T
Q  139 gatcactaaacttcctaccaattaacctcttggcatctgaaaaa 182  Q
    |||| ||||||||||| || |  |||||||| ||||||||||||    
T  14703964 gatcgctaaacttccttcccaacaacctcttagcatctgaaaaa 14704007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 34466523 - 34466362
Alignment:
Q  21 atttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatga 120  Q
    |||||||| |||||||||| |||||| | |||||| |||||||  | |||||| ||||||||||||| ||||| |||||| ||||||||||| ||||| |    
T  34466523 atttcctcagcacataggtgcttctcctgacccttatacttaagggaaatcattggcttgtcattaacaccagcaataactttgaatggccataacatca 34466424  T
Q  121 tatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaa 182  Q
    ||||  ||||||||   ||||||||||| || || |||||||||||||| ||||||||||||    
T  34466423 tatctgtttgaacatcaggatcactaaattttctgccaattaacctcttagcatctgaaaaa 34466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 4678268 - 4678126
Alignment:
Q  41 cttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatggga 140  Q
    |||||||| ||||||||||||||||  |||||| || || |||||   |||||  || ||| | |||||||| |||||||| || ||||||||||  | |    
T  4678268 cttctcttgacccttgtacttaacactaatcatcggtttatcattctcaccagtgatgaccctaaatggccacaacatgatgtctttttgaacaacagaa 4678169  T
Q  141 tcactaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    |||||| || ||||||||||||||||||| ||||||| |||||    
T  4678168 tcactatacctcctaccaattaacctcttagcatctgcaaaaa 4678126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 15595474 - 15595641
Alignment:
Q  18 gatatttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaaca 117  Q
    ||||||||||| ||||| | |  ||| |||| ||||||||| ||||||  |||||| || |||||||| | ||||   || |||||||||||||| |||     
T  15595474 gatatttcctcagcacaaaagcgcttttcttgacccttgtatttaacaataatcatgggtttgtcattcacacca---atgaccttgaatggccacaact 15595570  T
Q  118 tgatatccttttgaacaatggga-tcactaaacttcctaccaattaacctcttggcatctgaaaaaataac 187  Q
    | ||||| ||||||||||   || ||||||||||||||||  ||||| ||||| |||||||||||||||||    
T  15595571 ttatatcattttgaacaaacagaatcactaaacttcctactgattaatctcttagcatctgaaaaaataac 15595641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 52549172 - 52549102
Alignment:
Q  99 accttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacctctt 169  Q
    |||||||||| ||| ||||  ||||| | ||||||||  ||||||||||||||| ||||||||||||||||    
T  52549172 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctctt 52549102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 28220389 - 28220551
Alignment:
Q  21 atttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatga 120  Q
    ||||| || |||||||||| |||||| |  |||||||||||||||| |||||| || ||||| ||    || ||||| |||||||||||||| ||| | |    
T  28220389 atttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcatgggtttgtcgttcgttccggaaatgaccttgaatggccacaacttta 28220488  T
Q  121 tatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    |||| | ||||||||  |  ||||||||||||||||||||||||||||| |||||||||||||    
T  28220489 tatcatcttgaacaacagagtcactaaacttcctaccaattaacctcttagcatctgaaaaaa 28220551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 42555627 - 42555530
Alignment:
Q  68 aatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaattaacc 165  Q
    |||||| |||||| |||| |  || ||||| |||||||||||||| ||| | || || ||||||||||    |||| |||||||||||||||||||||    
T  42555627 aatcatgggcttgccatttattccggaaatgaccttgaatggccacaacttcatgtcattttgaacaacataatcattaaacttcctaccaattaacc 42555530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 43745285 - 43745447
Alignment:
Q  21 atttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatga 120  Q
    ||||| || |||||||||| |||||| |  |||||||||||||||| |||||  || |||||||| |  || ||||| |||||||| ||||| ||| | |    
T  43745285 atttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggccacaacttca 43745384  T
Q  121 tatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 183  Q
    |||| |||||||||   | |||| ||||||||||||||||||||||||| |||||||| ||||    
T  43745385 tatcattttgaacatcagaatcattaaacttcctaccaattaacctcttagcatctgacaaaa 43745447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 28911020 - 28911185
Alignment:
Q  21 atttcctccgcacataggttcttctcttaacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatga 120  Q
    |||||||| |||||||  |||||||| | | |||||||||| ||||  ||||| || |||||||| | ||| | ||| |||||||| ||| | |||||      
T  28911020 atttcctcagcacataatttcttctcctgatccttgtacttgacagatatcatggggttgtcattgacaccggcaatgaccttgaacggcgacaacattg 28911119  T
Q  121 tatccttttgaacaatgggatcactaaacttcctaccaattaacctcttggcatctgaaaaaataa 186  Q
     ||| |||||||||| ||||||||||||||||||| |||||| |||||| |||||||  |||||||    
T  28911120 aatcgttttgaacaacgggatcactaaacttcctatcaattatcctcttagcatctgtcaaaataa 28911185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 11171047 - 11171163
Alignment:
Q  60 ttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaa 159  Q
    |||||| ||||||| || |||||||| ||  ||  ||| || ||||||||||| ||| | | |||  |||| || |||||||||||||| |||| |||||    
T  11171047 ttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaa 11171146  T
Q  160 ttaacctcttggcatct 176  Q
    ||| |||||| ||||||    
T  11171147 ttagcctctttgcatct 11171163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 11276431 - 11276547
Alignment:
Q  60 ttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaatgggatcactaaacttcctaccaa 159  Q
    |||||| ||||||| || |||||||| ||  ||  ||| || ||||||||||| ||| | | |||  |||| || |||||||||||||| |||| |||||    
T  11276431 ttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaa 11276530  T
Q  160 ttaacctcttggcatct 176  Q
    ||| |||||| ||||||    
T  11276531 ttagcctctttgcatct 11276547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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