View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_low_38 (Length: 441)
Name: NF21097_low_38
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Original strand, 47523470 - 47523881
Alignment:
| Q |
15 |
gacagcaatattcttgtttgtgttcaatgtgtacaacagtttcattttgggtgtgtaaaggctttaggacttggatcaagtcacattgagagcaatggtg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47523470 |
gacagcaatattcttgtttgtgttcaatgtgcacaaaagtttcattttgggtgtgtaaaggctttaggacttggatcaagtcacattgagagcaatggtg |
47523569 |
T |
|
| Q |
115 |
aaaagaagaattggttttgcagtgtagtttgtggtaacatgttcttatgtctaaagaagttgtcagggaaaccaataacagttgcagctaatctaacttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47523570 |
aaaagaagaattggttttgcagtgtagtttgtggtaacatgttcttatgtctaaagaagttgtcagggaaaccaataacagttgcagctaatctaacttg |
47523669 |
T |
|
| Q |
215 |
gacattattgaagaatgtgagtaatgatgatcaatttagtcaaaagaagagaaagttgaatgtggctctagatgtattgtatgagagttttaacccaact |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
47523670 |
gacattattgaagaatgtgagtaatgatgatcaatttagtcaaaagaagataaagttgaatatggctcttgatgtattgtatgagagttttaacccaact |
47523769 |
T |
|
| Q |
315 |
attgatgctttatccggaagagaattgattaaagatgttgtttttagtagaggctcacaacataaacgcttgaactttcatggtttctataatgtgattt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47523770 |
attgatgctttatccggaagagaattgattaaagatgttgtttttagtagaggctcacaacataaacgcttgaactttcatagtttctataatgtgattt |
47523869 |
T |
|
| Q |
415 |
tagagaaaatgg |
426 |
Q |
| |
|
|||||||||||| |
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|
| T |
47523870 |
tagagaaaatgg |
47523881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 249 - 426
Target Start/End: Original strand, 47529076 - 47529253
Alignment:
| Q |
249 |
tttagtcaaaagaagagaaagttgaatgtggctctagatgtattgtatgagagttttaacccaactattgatgctttatccggaagagaattgattaaag |
348 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||| || |
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|
| T |
47529076 |
tttagtcaaaagaagcgtaagttaaatgtggctcttcatgtattgtatgagagtttttatccaactattgatgctttatctggaagagagttgattagag |
47529175 |
T |
|
| Q |
349 |
atgttgtttttagtagaggctcacaacataaacgcttgaactttcatggtttctataatgtgattttagagaaaatgg |
426 |
Q |
| |
|
| ||||||||||||||| ||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
47529176 |
acattgtttttagtagagactcggtacataagcgcttgaacttttgtggtttctataatgtgattttggagaaaatgg |
47529253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 47528823 - 47529048
Alignment:
| Q |
20 |
caatattcttgtttgtgttcaatgtgtacaacagtttcattttgggtgtgtaaaggctttaggacttggatcaagtcacattgagagcaatggtgaaaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||| ||||||||||||||||| |||| || ||| |||||||| ||||| |||| | ||||| |
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|
| T |
47528823 |
caatattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgtgtaaaggcaacaggatatgaatctagtcacatggagagtaatgttaaaaag |
47528922 |
T |
|
| Q |
120 |
aagaattggttttgcagtgtagtttgtggtaacatgttcttatgtctaaagaagttgtcagggaaaccaataacagttgcagctaatctaacttggacat |
219 |
Q |
| |
|
|||||||||||||||| | ||||||| | |||| |||| |||||||||||||| | | |||||||||| | ||||||| ||||||||||||||| |
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|
| T |
47528923 |
aagaattggttttgcaatatagtttgcgtgaacaggttcatatgtctaaagaagctattgtggaaaccaattaaggttgcagacaatctaacttggacac |
47529022 |
T |
|
| Q |
220 |
tattgaagaatgtgagtaatgatgat |
245 |
Q |
| |
|
| ||||||||||||| || ||||||| |
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|
| T |
47529023 |
tgttgaagaatgtgaatagtgatgat |
47529048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 422
Target Start/End: Original strand, 47550815 - 47550926
Alignment:
| Q |
311 |
aactattgatgctttatccggaagagaattgattaaagatgttgtttttagtagaggctcacaacataaacgcttgaactttcatggtttctataatgtg |
410 |
Q |
| |
|
|||||||||| |||||||| || ||| |||||| |||||||||| ||||||||| |||| || | ||||| |||||||||| ||||||||||| |||| |
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|
| T |
47550815 |
aactattgatcctttatccaaaaaagatttgattgaagatgttgtgtttagtagatcctcagaagagaaacgtttgaactttcgtggtttctatactgtg |
47550914 |
T |
|
| Q |
411 |
attttagagaaa |
422 |
Q |
| |
|
||| |||||||| |
|
|
| T |
47550915 |
attatagagaaa |
47550926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 47550649 - 47550708
Alignment:
| Q |
113 |
tgaaaagaagaattggttttgcagtgtagtttgtggtaacatgttcttatgtctaaagaa |
172 |
Q |
| |
|
|||||| || |||||||||||| || ||||||||| |||||||||||||||||| |||| |
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|
| T |
47550649 |
tgaaaaaaataattggttttgccatgaagtttgtgggaacatgttcttatgtctacagaa |
47550708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 121 - 426
Target Start/End: Complemental strand, 9820009 - 9819698
Alignment:
| Q |
121 |
agaattggttttgcagtgtagtttgtggtaacatgttcttatgtctaaagaagttgtcagggaaaccaataacagttgcagctaatctaacttggacatt |
220 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| |||||||| | ||||||| |||| |||| |||||||| |
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|
| T |
9820009 |
agaattggttttgcagtgtggtttgtgggaacatgttcttatgtctaaagaagttgttaggaaaaccaattaaggttgcagataatttaacatggacatt |
9819910 |
T |
|
| Q |
221 |
attgaagaatgtgagtaatgatgat--caa----tttagtcaaaagaagagaaagttgaatgtggctctagatgtattgtatgagagttttaacccaact |
314 |
Q |
| |
|
||||||||||||||| || |||| ||| |||| ||||||| |||| ||||||||| ||||||| | ||||||||||||| ||||||| |||||| |
|
|
| T |
9819909 |
ggtgaagaatgtgagtagtgttgatgacaaggagtttaatcaaaaggagagtaagttgaatatggctcttggtgtattgtatgagggttttaatccaact |
9819810 |
T |
|
| Q |
315 |
attgatgctttatccggaagagaattgattaaagatgttgtttttagtagaggctcacaacataaacgcttgaactttcatggtttctataatgtgattt |
414 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||| |||| || ||||| |||||| ||||||||||||||| |||| |
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|
| T |
9819809 |
tttgatgctttatcaggaagagagttgattaaagatgttgtttttagcagagaatcagaacacaatcgcttaaacttttgtggtttctataatgtaattt |
9819710 |
T |
|
| Q |
415 |
tagagaaaatgg |
426 |
Q |
| |
|
| |||||||||| |
|
|
| T |
9819709 |
tggagaaaatgg |
9819698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 121 - 426
Target Start/End: Original strand, 9853971 - 9854282
Alignment:
| Q |
121 |
agaattggttttgcagtgtagtttgtggtaacatgttcttatgtctaaagaagttgtcagggaaaccaataacagttgcagctaatctaacttggacatt |
220 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| |||||||| | ||||||| |||| |||| |||||||| |
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|
| T |
9853971 |
agaattggttttgcagtgtggtttgtgggaacatgttcttatgtctaaagaagttgttaggaaaaccaattaaggttgcagataatttaacatggacatt |
9854070 |
T |
|
| Q |
221 |
attgaagaatgtgagtaatgatgat--caa----tttagtcaaaagaagagaaagttgaatgtggctctagatgtattgtatgagagttttaacccaact |
314 |
Q |
| |
|
||||||||||||||| || |||| ||| |||| ||||||| |||| ||||||||| ||||||| | ||||||||||||| ||||||| |||||| |
|
|
| T |
9854071 |
ggtgaagaatgtgagtagtgttgatgacaaggagtttaatcaaaaggagagtaagttgaatatggctcttggtgtattgtatgagggttttaatccaact |
9854170 |
T |
|
| Q |
315 |
attgatgctttatccggaagagaattgattaaagatgttgtttttagtagaggctcacaacataaacgcttgaactttcatggtttctataatgtgattt |
414 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||| |||| || ||||| |||||| ||||||||||||||| |||| |
|
|
| T |
9854171 |
tttgatgctttatcaggaagagagttgattaaagatgttgtttttagcagagaatcagaacacaatcgcttaaacttttgtggtttctataatgtaattt |
9854270 |
T |
|
| Q |
415 |
tagagaaaatgg |
426 |
Q |
| |
|
| |||||||||| |
|
|
| T |
9854271 |
tggagaaaatgg |
9854282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 9820092 - 9820025
Alignment:
| Q |
20 |
caatattcttgtttgtgttcaatgtgtacaacagtttcattttgggtgtgtaaaggctttaggacttg |
87 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | | ||| ||||| |||||||||||| ||||| ||| |
|
|
| T |
9820092 |
caatattcttgtttgtgttcaatgtgagcaaaaatatcactttggatgtgtaaaggctgtaggaattg |
9820025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 249 - 426
Target Start/End: Complemental strand, 44870722 - 44870545
Alignment:
| Q |
249 |
tttagtcaaaagaagagaaagttgaatgtggctctagatgtattgtatgagagttttaacccaactattgatgctttatccggaagagaattgattaaag |
348 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||| | ||||||||||||| ||||||| |||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
44870722 |
tttagtcaagagaagcataagttgaatgcagctcttggtgtattgtatgagggttttaatccaactattgatgctttatctggaagagagttgattaaag |
44870623 |
T |
|
| Q |
349 |
atgttgtttttagtagaggctcacaacataaacgcttgaactttcatggtttctataatgtgattttagagaaaatgg |
426 |
Q |
| |
|
|| ||||||||||||||| ||| ||||||||||||||||||| | ||||||||||| ||||||||| |||||||||| |
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|
| T |
44870622 |
atcttgtttttagtagagattcagaacataaacgcttgaacttccgtggtttctatactgtgattttggagaaaatgg |
44870545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 44870975 - 44870758
Alignment:
| Q |
20 |
caatattcttgtttgtgttcaatgtgtacaacagtttcattttgggtgtgtaaaggctttaggacttggatcaagtcacattgagagcaatggtgaaaag |
119 |
Q |
| |
|
|||| ||||||| ||||| ||||||| ||| | ||||| ||||||||||||||| || | || ||||||| ||||||| ||||||||| | ||||| |
|
|
| T |
44870975 |
caattttcttgtatgtgtacaatgtgagcaaaaatttcactttgggtgtgtaaagactacaagatttggatctagtcacacagagagcaatattaaaaag |
44870876 |
T |
|
| Q |
120 |
aagaattggttttgcagtgtagtttgtggtaacatgttcttatgtctaaagaagttgtcagggaaaccaataacagttgcagctaatctaacttggacat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||| | ||||||| |||| ||| |||||||| |
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|
| T |
44870875 |
aagaattggttttgcagtgtagtttgtgggaacatgttcttatgtctaaagaagctattggggaaaccaattaaggttgcagataatataaattggacat |
44870776 |
T |
|
| Q |
220 |
tattgaagaatgtgagta |
237 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
44870775 |
tgttgaagaatgtgagta |
44870758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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