View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_4 (Length: 714)
Name: NF21097_low_4
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 52444152 - 52444436
Alignment:
| Q |
1 |
acactccaagatcctagatcagcaccaacataccaactcagtcacacttttcttaattcgtgtgaaattatcaaacgggtcactcattttcaaacaaact |
100 |
Q |
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| T |
52444152 |
acacttcaagatcctaagtcagcaccaacataccaactcagtcacacttttcttaattcgtgtgaaattatcaaacgggtcactcattttcaaacaaact |
52444251 |
T |
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| Q |
101 |
gaatatatgatagagcaatgtatagatgaaatacaattaattattgatgtcgaatcaaagatttaatcaaggtatcgtcttcaactattactcgcctgct |
200 |
Q |
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| T |
52444252 |
gaatatatgatagagcaatctatatatgaaatacaattaattattgatgtcgaatcaaagatttaatcacggtatcgtcttcaactattactcgcctgct |
52444351 |
T |
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| Q |
201 |
tcaagcgattaacgttaaggaagaaattatatgtctccattgtaggttcatcaggagaaact--atatatgatcactattatttg |
283 |
Q |
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| T |
52444352 |
tcaagcgattaacgttaaggaataaattatatgtctccattgtaggttcatcaggagaaactacatatatgatcactatcatttg |
52444436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 419 - 669
Target Start/End: Complemental strand, 52444145 - 52443895
Alignment:
| Q |
419 |
ctcaaagttttaaatatagtttccatcggtaccaattttgatgggttagtccatacaaagttttgctactttaaattgggtcatataaattgatcattcg |
518 |
Q |
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| T |
52444145 |
ctcaaagttttaaatatagtttccatcggtaccaatttcgatgggttagtccatacaaagttttgctactttaaattgggtcatataaattgatcattcg |
52444046 |
T |
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| Q |
519 |
agtttttcttaaatgattttgagaaagtgataatttcactaaattgtttttattttaccatatactattctaatcactattatcctaaatgcatgcgagt |
618 |
Q |
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| T |
52444045 |
agtttttcttaaatgattttgagaaagtgataatttcactaaattgtttttattttaccatatactattctaatcactattaccctaaatgtatgtgagt |
52443946 |
T |
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| Q |
619 |
atatattgatttaacaatgatgaaactagtataaattagatggtagaattg |
669 |
Q |
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| T |
52443945 |
atatattgatttaacaatgatgaaactagtataaattagatggtagaattg |
52443895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 52444431 - 52444505
Alignment:
| Q |
311 |
catttgttaaatttacaccatttaaattcgcatgttattttaaaaatacatattatttagtggaaatgaatcatt |
385 |
Q |
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| T |
52444431 |
catttgttaaatttacaccatttgaatttgcatgttattttaaaaatacatattatttagtggaaatgtatcatt |
52444505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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