View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_40 (Length: 429)
Name: NF21097_low_40
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 40405448 - 40405122
Alignment:
| Q |
11 |
cagagagaacaacaattgaaatccttgattcctgaattgccttgagaatagaaggtgaaagttgaagttcctcatcatcatt---------ttgaatttg |
101 |
Q |
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| T |
40405448 |
cagagagaacaacaattgaaatccttgactcccgaattgccttgagaatag---gtgaatgttgaagttgctcattatcattataatcattttgaatttg |
40405352 |
T |
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| Q |
102 |
atgtggtaagaagaaggtcttgattttcttgttgcgtaaagcatgatagagattacctgtaaaggtacagtaagtgtcctcccctctaaaacatagaaaa |
201 |
Q |
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| T |
40405351 |
atgtgggaagaagaaggtcttgattctcttgttgctcaaaccatgatagagattacctgtaaaggtacagtaagtgtcctcccctctaaaacatagaaaa |
40405252 |
T |
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| Q |
202 |
acatcgtacttgtagctgcagccatcaacc-ttttcattcaacatggccatgaccaaaggataagattatggctagtctttcaattactgaaaggctcta |
300 |
Q |
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| T |
40405251 |
acatcgtacatgtagctgcagccatcaacctttttcattcaacatggccatgaccaaaggataagattatggctagtctttcaattactgaaaggct--- |
40405155 |
T |
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| Q |
301 |
attaattgtgtctagtaggatgtaatgttagaaa |
334 |
Q |
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| T |
40405154 |
-ttaattgtgtctagtaggatgtgatgtttgaaa |
40405122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 40458322 - 40458583
Alignment:
| Q |
13 |
gagagaacaacaattgaaatccttgattcctgaattgccttgagaatagaaggtgaaagttgaagttcctcatcatcattttgaatttgatgtggtaaga |
112 |
Q |
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| T |
40458322 |
gagagaacgacgattgaaatccttgattcctgaattgccttgagaatagaaggtgaaagttgaagttcctcatcatcattttgaatttgatcatgtggga |
40458421 |
T |
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| Q |
113 |
agaaggtcttgattttcttgttgcgtaaagcatgatagagattacctgtaaaggtacagtaagtgtcctcccctctaaaacatagaaaaacatcgtactt |
212 |
Q |
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| T |
40458422 |
agaaggtcttgattttcttgttgcgtaaagcatgatagagattacctgcgaaggtacaataagtatcttcccctctaaaacttagaaaaacatcgtactt |
40458521 |
T |
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| Q |
213 |
gtagctgcagccatcaaccttttcattcaacatggccatgaccaaaggataagattatggct |
274 |
Q |
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| T |
40458522 |
gtagctgctgccatcaacctcttcattcatcatggccatgaccaaaggattagattacggct |
40458583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 40407816 - 40407709
Alignment:
| Q |
113 |
agaaggtcttgattttcttgttgcgtaaagcatgatagagattacctgtaaaggtacagtaagtgtcctcccctctaaaacatagaaaaacatcgtactt |
212 |
Q |
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| T |
40407816 |
agaaggtcttgattctcttgttacgcagagcatgatagagactacctgtgaaggtatagtaagtgtccacctttctaaaacataaaaaaacatcgtactt |
40407717 |
T |
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| Q |
213 |
gtagctgc |
220 |
Q |
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| T |
40407716 |
gtagctgc |
40407709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 40407906 - 40407864
Alignment:
| Q |
14 |
agagaacaacaattgaaatccttgattcctgaattgccttgag |
56 |
Q |
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| T |
40407906 |
agagaacaacaatagaaatccttgcttccttaattgccttgag |
40407864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 40326566 - 40326522
Alignment:
| Q |
11 |
cagagagaacaacaattgaaatccttgattcctgaattgccttga |
55 |
Q |
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| T |
40326566 |
cagagaaaacaacaattgaaatccttgatgcctcaattgctttga |
40326522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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