View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_low_44 (Length: 403)
Name: NF21097_low_44
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 388
Target Start/End: Complemental strand, 556411 - 556051
Alignment:
| Q |
12 |
atgattaattagggtttcaaaacaaaattggggataataaacacaacttatatatggaagaatatatggattatttactttttaagatttgcatactttt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
556411 |
atgattaattagggtttcaaaacaaaattggg-ataataaacacaaattatatatgaaagaatatatggattatttactttttaagatttgcatactttt |
556313 |
T |
|
| Q |
112 |
tacgtaaaaactcaaacctataaatgataatgcatatacttggagaaaagaaaaaatgttttgtcaatataaattagtttacattgacgttcgataaaaa |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
556312 |
tacgtaaaa---------------tgataatgcatatacttggagaaaagaaaaaatgttttgtcaatataaattagtttacattgacgttcgataaaaa |
556228 |
T |
|
| Q |
212 |
ttgagcatttgacagttattttaaaaataatgattataaactctgaattaaactatttttacagtcagtgcatctgaattaaactctatgacttattaga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
556227 |
ttgagcatttgacagttattttaaaaatcacgattataaactctgaattaaactatttttagagtcaatgcatctgaattaaactctatgacttattaga |
556128 |
T |
|
| Q |
312 |
taataaaaatctaggaatgaagtagagtcaaatggtgatcgaccaaatgcacaataaaaattacagactaagttaag |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
556127 |
taataaaaatctaggaatgaagtagagtcagatggtgatctaccaaatgcaaaataaaaattacagactaagttaag |
556051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University