View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_46 (Length: 391)
Name: NF21097_low_46
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_46 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 16344819 - 16344463
Alignment:
| Q |
15 |
gcaaccttcttgagaagtagagtggttaggagtaataaattcataggatatcacatattttcttctttctggagtggtatcaaagctcaggcttaccatg |
114 |
Q |
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| T |
16344819 |
gcaaccttcttgagaagtagagtggtcaggagtaataaattcataggatatcacatattttcttctttgtggagtggtatcaaagctgaggcttaccatg |
16344720 |
T |
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| Q |
115 |
ttctaaataattctagatggcaacttggtgatggtcataaaattaatttttggacagatgattggtgtggatcccctttggttgacttgcttcatattcc |
214 |
Q |
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| T |
16344719 |
ttctaaataattgtagatggcaacttagtgatggtcataaaattaatttttggacagatgattggtgtggatcccctttggttgacttgcttcatatttc |
16344620 |
T |
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| Q |
215 |
ccataatctgcacaataatctgcagtccaaagtgaatgatttcatccaattctcaatggcatgttccaatggagttgcagctagcctatccatccttaat |
314 |
Q |
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| T |
16344619 |
ccataatctgcac---aatctgcagtccaaagtgaatgatttcatccaattctcaatggcatgttccaatggagttgcagctagcctatccatccttaat |
16344523 |
T |
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| Q |
315 |
tcaccatattaataaaatcactcactattccttggaggcataaagctgataagttcatatggaa |
378 |
Q |
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| T |
16344522 |
gcaccatattaataaaa----tcactattccttggaggcataaagctgataagttcatatggaa |
16344463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 275
Target Start/End: Complemental strand, 12043878 - 12043624
Alignment:
| Q |
24 |
ttgagaagtagagtggttaggagtaataaattcataggatatcacatattttcttctttctggagtggtatcaaagctcaggcttaccatgttctaaata |
123 |
Q |
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| T |
12043878 |
ttgagaagtagagtactcagaaataacaagttcataggttatcatattttttattcagtctggagtggcattagaactcaagcttatcatgttttaaaca |
12043779 |
T |
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| Q |
124 |
at--tctagatggcaacttggtgatggtcataaaattaatttttggacagatgattggtgtggatcccctttggttgacttgcttcatattccccataat |
221 |
Q |
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| T |
12043778 |
acactctagatggttgcttggtgatggccaaaagatcaacttctggactcatgattggtgtggaacccccttg-ttgatttgtttcatattccccataac |
12043680 |
T |
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| Q |
222 |
ctgcacaataatctgcagtccaaagtgaatgatttcatc--caattctcaatggca |
275 |
Q |
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| T |
12043679 |
ctgcatcataatcttctctctacagtgaatgactacatcatcaattctcaatggca |
12043624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 29474 - 29656
Alignment:
| Q |
20 |
cttcttgagaagtagagtggttaggagtaataaattcataggatatcacatattttcttctttctggagtggtatcaaagctcaggcttaccatgttcta |
119 |
Q |
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| T |
29474 |
cttcttgagaagtagagtgctcagaaacaataatttgataggctatcatattttttcttcaatctggagtggtattaaaactcaagcctatcatgtgttg |
29573 |
T |
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| Q |
120 |
aataattctagatggcaacttggtgatggtcataaaattaatttttggacagatgattggtgtggatcccctttggttgactt |
202 |
Q |
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| T |
29574 |
aacaactccagatggctgcttggagatgggtatagaattaacttttggaaccatgattggtgcggtactcctttggttgactt |
29656 |
T |
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