View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_low_5 (Length: 693)

Name: NF21097_low_5
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21097_low_5
NF21097_low_5
[»] scaffold2079 (2 HSPs)
scaffold2079 (35-291)||(141-396)
scaffold2079 (601-674)||(443-516)
[»] chr7 (2 HSPs)
chr7 (38-290)||(6241962-6242208)
chr7 (601-645)||(6242256-6242300)
[»] chr2 (8 HSPs)
chr2 (41-108)||(15641840-15641907)
chr2 (520-597)||(36807230-36807309)
chr2 (155-194)||(10850715-10850754)
chr2 (155-194)||(10878229-10878268)
chr2 (55-105)||(15622006-15622057)
chr2 (55-105)||(15643846-15643897)
chr2 (55-105)||(15652896-15652947)
chr2 (38-108)||(43724873-43724943)
[»] chr3 (1 HSPs)
chr3 (156-194)||(16724110-16724148)
[»] chr1 (1 HSPs)
chr1 (44-108)||(10682669-10682732)


Alignment Details
Target: scaffold2079 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 35 - 291
Target Start/End: Original strand, 141 - 396
Alignment:
Q  35 cggtgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataacatcgatnnnnnnnngtgaatataaaag 134  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||| |||         ||||||||||||    
T  141 cggtgtagcaaatcaattttgtaggaaaacctctttgaagtttggagaaagaaatagtctcttgcaaaataacatggataaaaaaaa-tgaatataaaag 239  T
Q  135 aatattttggaacgcagacactacttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatccgcc 234  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  240 aatattttggaacgcaggcactacttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatccgcc 339  T
Q  235 cataggtgaccaacataaattgcaaattatgggactatcctcaaatgcacaagttgg 291  Q
    |||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  340 cataggtgaccaacatgaattgcaaattatgcgactatgctcaaatgcacaagttgg 396  T

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Target: scaffold2079; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 601 - 674
Target Start/End: Original strand, 443 - 516
Alignment:
Q  601 aaaaatgaaggaataaatggaatctatttggtgggacaggttcaannnnnnnngttcgttggacaagaaagttc 674  Q
    |||||||||||||||||||||||||||||||||||||||||||||        | |||||||||||||||||||    
T  443 aaaaatgaaggaataaatggaatctatttggtgggacaggttcaattgtttttgctcgttggacaagaaagttc 516  T

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Target: chr7 (Bit Score: 108; Significance: 7e-54; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 38 - 290
Target Start/End: Original strand, 6241962 - 6242208
Alignment:
Q  38 tgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataacatcgat-nnnnnnnngtgaatataaaagaa 136  Q
    ||||||||||||||||| || |||||||||||||||| | ||||||||||||||||||||||||||||| | ||||         |||||| ||||||||    
T  6241962 tgtagcaaatcaattttttaagaaaacctctttgaagtttggagaaagagatagtctcttgcaaaataataacgataaaaaaaaagtgaatgtaaaagaa 6242061  T
Q  137 tattttggaacgcagacactacttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatccgccca 236  Q
    ||||||| ||||  | ||||||||||||||||||||||| ||| ||||||||||||| ||||       |||||||||||||||||| |||||||| |||    
T  6242062 tattttgaaacgtgggcactacttttttgcaatattaagttagtctactatacttaaccggg-------tttctcatattgcgtaccgcgaatccgtcca 6242154  T
Q  237 taggtgaccaacataaattgcaaattatgggactatcctcaaatgcacaagttg 290  Q
    || |||| |||||| |||||||||||||| |||||| |||||||| ||||||||    
T  6242155 tacgtgatcaacatgaattgcaaattatgtgactatgctcaaatgaacaagttg 6242208  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 601 - 645
Target Start/End: Original strand, 6242256 - 6242300
Alignment:
Q  601 aaaaatgaaggaataaatggaatctatttggtgggacaggttcaa 645  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6242256 aaaaatgaaggaataaatggaatctatttggtgggacaggttcaa 6242300  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 15641840 - 15641907
Alignment:
Q  41 agcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca 108  Q
    ||||||| |||| ||||||||||| ||||||||||| |||| ||||||  | ||||||||||||||||    
T  15641840 agcaaataaattctgtaggaaaacatctttgaagcttggaggaagagaacgcctcttgcaaaataaca 15641907  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 597
Target Start/End: Complemental strand, 36807309 - 36807230
Alignment:
Q  520 tgtaaaggctatatattagccattttgctttaataaaggatattcagttttgcaaacct--gtctcacgctctatctcct 597  Q
    |||||| | ||||||||||||| ||||||||||||||| |||  |||||| ||||||||  || ||||| ||||||||||    
T  36807309 tgtaaatgttatatattagccactttgctttaataaagaatacccagtttcgcaaacctgagtgtcacgatctatctcct 36807230  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 10850754 - 10850715
Alignment:
Q  155 ctacttttttgcaatattaagatagcctactatacttaat 194  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  10850754 ctacctttttgcaatattaagatagcttactatacttaat 10850715  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 10878268 - 10878229
Alignment:
Q  155 ctacttttttgcaatattaagatagcctactatacttaat 194  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  10878268 ctacctttttgcaatattaagatagcttactatacttaat 10878229  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 15622006 - 15622057
Alignment:
Q  55 gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata 105  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  15622006 gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata 15622057  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 15643846 - 15643897
Alignment:
Q  55 gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata 105  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  15643846 gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata 15643897  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 15652896 - 15652947
Alignment:
Q  55 gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata 105  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  15652896 gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata 15652947  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 43724943 - 43724873
Alignment:
Q  38 tgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca 108  Q
    |||||||||| | |||||  ||||||||| ||| ||| | |||||||||||  ||||||||||||||||||    
T  43724943 tgtagcaaataatttttgcgggaaaacctatttaaagtttggagaaagagaacgtctcttgcaaaataaca 43724873  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 16724110 - 16724148
Alignment:
Q  156 tacttttttgcaatattaagatagcctactatacttaat 194  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  16724110 tacttttttgcaatattaagatagtttactatacttaat 16724148  T

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Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 10682732 - 10682669
Alignment:
Q  44 aaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca 108  Q
    |||| |||||||||| |||| |||||||||||| |||||||||||   | |||||||||||||||    
T  10682732 aaataaattttgtag-aaaatctctttgaagcttggagaaagagaacatgtcttgcaaaataaca 10682669  T

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