View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_50 (Length: 378)
Name: NF21097_low_50
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 2272344 - 2271978
Alignment:
| Q |
1 |
tgtttttatgttaaatagcctaatggataaaatttcacatttaagaagaatgagtaggaattcagagttcaaacgccaacctttgcatactcgagtgcat |
100 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| |||| |||||||||| |
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| T |
2272344 |
tgtttttatgttaaatagcctaatgactagaatttcacatttaagaagaataagtaggaatccagagttcaaactccaacctttacatattcgagtgcat |
2272245 |
T |
|
| Q |
101 |
tgcctccaacaatcgaactatgctcacttgatcgagttgcaccacttttgtgattataaacaa---tatctcattttatgcatgaatgataaaattagga |
197 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| |
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| T |
2272244 |
tgtctccaacaatcgaactatgctcacttgatcgacttgcaccacttttgtgattataaacaaaaatatctcattttatgcatcaatgataaaattggga |
2272145 |
T |
|
| Q |
198 |
aacataacaaattgcaggattggttgccaaggagggtaatgagtgcatggcgtgtagctgggatagtgcactgcttagaagaatggaatgaacatgagtg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272144 |
aacataacaaattgcaggattggttgccaaggagggtaatgagtgcatggcgtgtagctgggatagtgcactgcttagaagaatggaatgaacatgagtg |
2272045 |
T |
|
| Q |
298 |
tggctacaacatgattaacatggacaaagtttggccttcagctcttaaacatggattcaaacctctc |
364 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272044 |
tggctacaacatgattaacatggacaaagtttggccttcagctcttaaacatggattcaaacctctc |
2271978 |
T |
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