View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_51 (Length: 377)
Name: NF21097_low_51
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 27 - 268
Target Start/End: Complemental strand, 20670758 - 20670517
Alignment:
| Q |
27 |
tatatacatatataagtttaaatgcacttttagtcctatttttgttgattcacgattttagtccttcaatttctaaacctagttgttaaaatttcataaa |
126 |
Q |
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| T |
20670758 |
tatatacatatagaagattaaatgcacttttagtcctatttttgttgattcacgattttagtccttcaatttctaaacctagttgttaaaatttcataaa |
20670659 |
T |
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| Q |
127 |
ttttctctaccactgaagttgagacttatttttgctgatatgtcaagtttaataataagctagcaagtcacagggtgatgtggcatcgcatatgtgaatg |
226 |
Q |
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| T |
20670658 |
ttttctgcaccactgaagttgagacttatttttgctgatatgtcaagtttaataataagctaacaagtcacagggtgatgtggcatcgcatatgtgaatt |
20670559 |
T |
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| Q |
227 |
aaattttaatattttattttccatacattaaagtactgtttt |
268 |
Q |
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| T |
20670558 |
aaattttattattttattttccatacattaaagtactgtttt |
20670517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 20670474 - 20670406
Alignment:
| Q |
309 |
agattttccaaaaatatacattgtaatagtgaattgacagctcattgttaaacgacaaattagcaaaaa |
377 |
Q |
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| T |
20670474 |
agattttccaaaaatatacattgtcatcgtgacttgacagctcattgttcaccgacacatcagcaaaaa |
20670406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 27547289 - 27547365
Alignment:
| Q |
120 |
tcataaattttctctaccactgaagttgagacttatttttgctgatatgtcaagtttaataataagctagcaagtca |
196 |
Q |
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| T |
27547289 |
tcataaattttctctaccactgaattcgagagttatatttgctgatgtgtcaagttgaataatgagctggcaagtca |
27547365 |
T |
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