View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_52 (Length: 374)
Name: NF21097_low_52
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_52 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 6599674 - 6600030
Alignment:
| Q |
18 |
aggagaatatagaagtataaagctgatgaagtctaactcaggtttgataccagagatgccatctattctcacatgtcgcactcgcatgactggccaatcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6599674 |
aggagaatatagaagtataaagctgatgaagtctaactcaggtttgataccagagatgccatctattctcacatgtcgcactcgcatgactggccaatcc |
6599773 |
T |
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| Q |
118 |
gaatagacatcatcccaacagtcggcatggtgagctaatggaagaggctgctcctcaggccgtgcctacatgcaatcataacacacacgtgaaaaagtct |
217 |
Q |
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| T |
6599774 |
aaatagacatcctcccaacagtcggcatggtgagctaatggaagaggctgctcctcaggccgtgcctacatgcaaccataacacacacgtgaagaagtct |
6599873 |
T |
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| Q |
218 |
taaaaacttaaaagactagatcaagaacttaaggccccagacaaaattcaaaacaaaacaactttgcaaaatctagttctagatgttaattcgagtagtg |
317 |
Q |
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| T |
6599874 |
taaaaacttaaaagactagatcaagaacttaagaccccagccaaaattcaaaacaaaacaactttgcaaaatctagttctagatgttaattcgagtagtg |
6599973 |
T |
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| Q |
318 |
ctaacaacacaacaatacaacatctgattctctctttctaactctgtatgattagtt |
374 |
Q |
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| T |
6599974 |
ctaacaacacaacaatacaacatctgattctctctttctaacactgtattattagtt |
6600030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 6591383 - 6591449
Alignment:
| Q |
26 |
atagaagtataaagctgatgaagtctaactcaggtttgataccagagatgccatctattctcacatg |
92 |
Q |
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| T |
6591383 |
atagaagtagaaagctgatgaagtctaactcagatttgataccagagataccaactattctcacatg |
6591449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 3366447 - 3366406
Alignment:
| Q |
60 |
tttgataccagagatgccatctattctcacatgtcgcactcg |
101 |
Q |
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| T |
3366447 |
tttgataccagagatgccatctattgtcacatgtcgcactcg |
3366406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 3380321 - 3380238
Alignment:
| Q |
18 |
aggagaatatagaagtataaagctgatgaagtctaactcaggtttgataccagagatgccatctattctcacatgtcgcactcg |
101 |
Q |
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| T |
3380321 |
aggagaatagagaagtagaaaccgaataaaatctaattccgatttgataccagagatgtcatctattgtcacatgtcgcactcg |
3380238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 4333593 - 4333674
Alignment:
| Q |
20 |
gagaatatagaagtataaagctgatgaagtctaactcaggtttgataccagagatgccatctattctcacatgtcgcactcg |
101 |
Q |
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| T |
4333593 |
gagaatatagaagtagaaatctgatcaaatttaattcagactgggtaccagagatgccatctatcgtcacatgtcgcactcg |
4333674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 3342761 - 3342696
Alignment:
| Q |
18 |
aggagaatatagaagtataaagctgatgaagtctaactcaggtttgataccagagatgccatctat |
83 |
Q |
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| T |
3342761 |
aggagaatatagaagtagaaattggataaaatctaattcagatttggtaccagagatgccatctat |
3342696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 20936218 - 20936135
Alignment:
| Q |
18 |
aggagaatatagaagtataaagctgatgaagtctaactcaggtttgataccagagatgccatctattctcacatgtcgcactcg |
101 |
Q |
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||||||||||||||||| ||| |||| || ||||| || |||| ||||| ||||||||||||| |||||||||||||||| |
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| T |
20936218 |
aggagaatatagaagtagaaatttgataaaatctaattccaatttgttaccaaagatgccatctatcgtcacatgtcgcactcg |
20936135 |
T |
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