View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_53 (Length: 372)
Name: NF21097_low_53
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 26643049 - 26642699
Alignment:
| Q |
19 |
aagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactgatagtattagccttcaaattatcagaaatcacgtctcttccaagcttttgaac |
118 |
Q |
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| T |
26643049 |
aagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactgatagtattagccttcaaattatcagaaatcacgtctcttccaagcttttgaac |
26642950 |
T |
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| Q |
119 |
atcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaacagtaattgctaattaagcatccaaacacaagaaattcaaatttcaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26642949 |
atcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaacagtaattgctaattaagcatccaaacacaagaaattcaaatttc--aa |
26642852 |
T |
|
| Q |
219 |
actaaaagtgacgaaaactacagaattatattcaaaactaataagtccatttcagaaaatgcattaactaagctaaatctcg-----------------a |
301 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26642851 |
actaaaagtgacgaaaactacagaattttattcaaaactaataagtccatttcagaaaatgcattaactaagctaaatctcgaattgcacattatcacaa |
26642752 |
T |
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| Q |
302 |
acacgatacactcatagttcgttacctttactgcaactgcatgaaaaccgttc |
354 |
Q |
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|||| |||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
26642751 |
acacaatacacgcatatttcgttacctttactgcaactgcatgaaaaccgttc |
26642699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 26656518 - 26656303
Alignment:
| Q |
19 |
aagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactgatagtattagccttcaaattatcagaaatcacgtctcttccaagcttttgaac |
118 |
Q |
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||||||| |||| ||||| ||| |||||||||||||||||||| ||||||| ||||||||||||||| |||| |||| |||||||||||||||||||||| |
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| T |
26656518 |
aagtaattgatgtcagtgcaaaattcctgagcctagtaatctcgctgatagcattagccttcaaattttcaggaatcgcgtctcttccaagcttttgaac |
26656419 |
T |
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| Q |
119 |
atcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaacagtaattgctaattaagcatccaaacac--aagaaattcaaatttcaa |
216 |
Q |
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|| | | |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||| || ||| ||||| ||| |
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| T |
26656418 |
attgttatttccaatgcacctcaatgcattttcacatgcctattcaccaaacaataattactaattatgcattcaaacacaaaacaaactcaaaattc-- |
26656321 |
T |
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| Q |
217 |
aaactaaaagtgacgaaa |
234 |
Q |
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|||||||||||||||||| |
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| T |
26656320 |
aaactaaaagtgacgaaa |
26656303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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