View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_57 (Length: 368)
Name: NF21097_low_57
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12571511 - 12571742
Alignment:
| Q |
1 |
tatggagattgaggcagctatatgccatagtttgattgatgatattttggacatggatggttaatagttgagacttgagaggaacctttttcactcctaa |
100 |
Q |
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| T |
12571511 |
tatggagattgaggcagctatattacaaagtttgattgatgatattttggacatggatggttaatagttgagacttgagaggaacctttttcactcctaa |
12571610 |
T |
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| Q |
101 |
aagtactccgaaagtacatatttg-aagnnnnnnnnttgcggtttttgtgccgtttggatgtatacttccagaatcctatgtatattttacgaaacatgt |
199 |
Q |
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| T |
12571611 |
aagtactccgaatgtagatatttgaaaaaattaaaaatgcggtttttgtgctgtttggatgtatacttccagaatcctgtgtatattttacgaaacatgt |
12571710 |
T |
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| Q |
200 |
ggattggtaatgttgttcgctaatgatttctc |
231 |
Q |
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| T |
12571711 |
ggattggtaatgttgttcgctaatgatttctc |
12571742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 12571785 - 12571862
Alignment:
| Q |
227 |
ttctcgaacaaaaatgctccgattttactgcggtgtagccctcgaaaagcnnnnnnntaggtctttcacataaattta |
304 |
Q |
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| T |
12571785 |
ttctcgaacaaaaatgctccgattttactgcggtgtagccctcgaaaaacaaaaaaataggtctttcacataaattta |
12571862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 12572396 - 12572457
Alignment:
| Q |
295 |
cataaatttatctgtggttgattgaaattcatttggaccatgctaactctaataa-ctccctatg |
358 |
Q |
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| T |
12572396 |
cataaatttatctgt---tgattgaaattcatttggaccatgctaactctaataatctccctatg |
12572457 |
T |
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