View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_58 (Length: 368)
Name: NF21097_low_58
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_58 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 61 - 352
Target Start/End: Complemental strand, 8941149 - 8940859
Alignment:
| Q |
61 |
cttgctacatctgtcatgtgtatcgttaacatgaaaagcgtcgcttaatacgttggctttatccggacaattgatacaacattgacatcgacgcttatta |
160 |
Q |
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| T |
8941149 |
cttgctacatctatcatgtgtaacgttaacatgaaaagcgtcgcttaatacgttggctttatccggacaattgatacaacattgacatcgacgcttatta |
8941050 |
T |
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| Q |
161 |
cttgaaagttgttgacattgacaatctttagccatggtccatgatcctactccattaatgaattcatctgtacaatcatgtccatgtggccaacgatctt |
260 |
Q |
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| T |
8941049 |
cttgaaagttgttgacattgacaatctttagccatggtccatgatcctactccattaatgaattcatctgtacaatcacgtccatgtggccaatgatctt |
8940950 |
T |
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| Q |
261 |
tacagcttccatcaactacaatttctttgagacagtagtccacacctacaacattacaattaacaaaattataaaatatatagtacttattg |
352 |
Q |
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| T |
8940949 |
tacagcttccatcaactacaatttctttgagacagtagtccacacctacaacattataatcaacaaaattatcaaaaata-agtacttattg |
8940859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 8991904 - 8992016
Alignment:
| Q |
127 |
acaattgatacaacattgacatcgacgcttattacttgaaagttgttgacattgacaatctttagccatggtccatgatcctactccattaatgaattca |
226 |
Q |
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||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |
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| T |
8991904 |
acaattgatgcaacattggcatcgacgcttattatctgaaagttgttgacattgacaatcctgagccatggtccatgatcctactccagacatgaattct |
8992003 |
T |
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| Q |
227 |
tctgtacaatcat |
239 |
Q |
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| T |
8992004 |
tctctacaatcat |
8992016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 9016351 - 9016463
Alignment:
| Q |
127 |
acaattgatacaacattgacatcgacgcttattacttgaaagttgttgacattgacaatctttagccatggtccatgatcctactccattaatgaattca |
226 |
Q |
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||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |
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| T |
9016351 |
acaattgatgcaacattggcatcgacgcttattatctgaaagttgttgacattgacaatcctgagccatggtccatgatcctactccagacatgaattct |
9016450 |
T |
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| Q |
227 |
tctgtacaatcat |
239 |
Q |
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||| ||||||||| |
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| T |
9016451 |
tctctacaatcat |
9016463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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