View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_59 (Length: 355)
Name: NF21097_low_59
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 338
Target Start/End: Complemental strand, 21652674 - 21652341
Alignment:
| Q |
7 |
attctacaagcatatgttttgtaagctcatcatgcaattaaaaaatttgaatcgttacgagtgctttgaaaatcatagcatacctgaatcatatgccaga |
106 |
Q |
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| T |
21652674 |
attctacaagcatatgttttgtaagctcatcatgcaattaaaaaatttgaatcgttacgggtgctttgaaaatcatagcatacctgaatcatatgccaga |
21652575 |
T |
|
| Q |
107 |
cgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatctnnnnnnnnnn--ggaacgattatcatgatagcctaaagaaaataaagc |
204 |
Q |
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| T |
21652574 |
cgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatctaaaaaaaaaaaaggaactattatcatgatagcctaatgaaaataaagc |
21652475 |
T |
|
| Q |
205 |
ctatcgaaaaagttaagttacatttaaaatttgcatcaaggaagaagaaagaccatacgcggcacaaggaggcaaatctggactaccacaccagcccggt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21652474 |
ctatcgaaaaagttaagttacatttaaaatttgcatcaaggaagaagaaagaccatacgcggcacaaggaggcaaatctggactaccacaccagcccggt |
21652375 |
T |
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| Q |
305 |
ttctcatctgtaattcttttcaccaagaaacata |
338 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
21652374 |
ttctcatctgtaactcttttcaccaagaaacata |
21652341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 40419263 - 40419335
Alignment:
| Q |
86 |
atacctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaatct |
158 |
Q |
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| T |
40419263 |
atacctgaagcatatgccacacacaacgccatgcttcccgagaaaaagcaggggccataatttccacaaatct |
40419335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 37456778 - 37456711
Alignment:
| Q |
88 |
acctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaa |
155 |
Q |
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||||||||||||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| || ||||| |
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| T |
37456778 |
acctgaatcatatgccacacgcagcgccatgcttcacgtgaaaacactggagccataatctcaacaaa |
37456711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 39263194 - 39263127
Alignment:
| Q |
88 |
acctgaatcatatgccagacgcaacgccaagcttctcgagaaaagactggggccataatttctacaaa |
155 |
Q |
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||||||||||||||||| || |||||||| |||||||| || || ||||| |||||||| || ||||| |
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| T |
39263194 |
acctgaatcatatgccacacacaacgccatgcttctcgcgagaatactggagccataatctcaacaaa |
39263127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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