View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_61 (Length: 341)
Name: NF21097_low_61
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 45198545 - 45198229
Alignment:
| Q |
17 |
catgaaaaactattgattgtgatgaataaccataagaagtttggtagattattttatagatataatgactgtgaaaaacttattatgttgctttgtgcag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
45198545 |
catgaaaaactattgattgtgatgaataaccataagaagtttggtagattattttatagataaaatgactgtgaaaaacttattatgctgctttgtgcag |
45198446 |
T |
|
| Q |
117 |
gctagagaaggtcttacagaggtgcatttccttccctttaatccagtcgacaagcgtaccgccataacatacatagacactgacggtaattggcaccgag |
216 |
Q |
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| T |
45198445 |
gctagagaaggtcttacagaggtgcatttccttccctttaatccagtcgacaagcgtaccgccataacatacatagacactgacggtaattggcaccgag |
45198346 |
T |
|
| Q |
217 |
taagcaaaggggcaccggagcaggtaaacaaatagacctttcaccagtcatatctgacatctatcgtttcacatgacaataaatttttgaattgccattt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||| |
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| T |
45198345 |
taagcaaaggggcaccggagcaggtaaacaaatagacctttcaccagtcatatttgacatctatcgtttcacatgacaatacatttttgaatttcctttt |
45198246 |
T |
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| Q |
317 |
agattattgttctgtgc |
333 |
Q |
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||||||||| ||||||| |
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| T |
45198245 |
agattattgatctgtgc |
45198229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 76 - 325
Target Start/End: Original strand, 30340489 - 30340738
Alignment:
| Q |
76 |
atataatgactgtgaaaaacttattatgttgctttgtgcaggctagagaaggtcttacagaggtgcatttccttccctttaatccagtcgacaagcgtac |
175 |
Q |
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| T |
30340489 |
atataatgatagtgaaaaactttttatgctgcttggtgcaggctagagaagttctaacagaggtgcatttccttccctttaatccagtggacaagcgtag |
30340588 |
T |
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| Q |
176 |
cgccataacatacatagacactgacggtaattggcaccgagtaagcaaaggggcaccggagcaggtaaacaaatagacctttcaccagtcatatctgaca |
275 |
Q |
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| T |
30340589 |
ctccttaacatacatagacactgacggtaattggcaccgagtaagcaagggagcaccggaggaggtaaacaaatagacctttcaccagtcatatttggca |
30340688 |
T |
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| Q |
276 |
tctatcgtttcacatgacaataaatttttgaattgccatttagattattg |
325 |
Q |
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||||| ||||||||||||||||| |||||||||| || |||||||||||| |
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| T |
30340689 |
tctattgtttcacatgacaataattttttgaatttccttttagattattg |
30340738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 71 - 325
Target Start/End: Original strand, 23916235 - 23916489
Alignment:
| Q |
71 |
tatagatataatgactgtgaaaaacttattatgttgctttgtgcaggctagagaaggtcttacagaggtgcatttccttccctttaatccagtcgacaag |
170 |
Q |
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|||| ||||||||| ||||||||||| ||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
23916235 |
tatatatataatgatagtgaaaaactttttatgctgcttggtgcaggctagagaagttctaacagaggtgcatttccttccctttaatccagtggacaag |
23916334 |
T |
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| Q |
171 |
cgtaccgccataacatacatagacactgacggtaattggcaccgagtaagcaaaggggcaccggagcaggtaaacaaatagacctttcaccagtcatatc |
270 |
Q |
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||| | || ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
23916335 |
tgtagctccttaacatacatagacactgacggtaattggcaccgagtaagcaagggagcaccggaggaggtaaacaaatagacctttcaccggtcatatt |
23916434 |
T |
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| Q |
271 |
tgacatctatcgtttcacatgacaataaatttttgaattgccatttagattattg |
325 |
Q |
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|| ||||||| ||||||||||||||||| |||||||||| || |||||||||||| |
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| T |
23916435 |
tggcatctattgtttcacatgacaataagtttttgaatttccttttagattattg |
23916489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 71 - 325
Target Start/End: Complemental strand, 18989288 - 18989034
Alignment:
| Q |
71 |
tatagatataatgactgtgaaaaacttattatgttgctttgtgcaggctagagaaggtcttacagaggtgcatttccttccctttaatccagtcgacaag |
170 |
Q |
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|||| ||||||||| ||||||||||| ||||| ||||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |||||| |
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| T |
18989288 |
tatatatataatgatagtgaaaaactttttatgctgcttggtgcaggctagagaagttctaacagaggtgcatttctttccctttaatccagtggacaag |
18989189 |
T |
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| Q |
171 |
cgtaccgccataacatacatagacactgacggtaattggcaccgagtaagcaaaggggcaccggagcaggtaaacaaatagacctttcaccagtcatatc |
270 |
Q |
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||| | || ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
18989188 |
tgtagctccttaacatacatagacactgacggtaattggcaccgagtaagcaagggagcaccggaggaggtaaacaaatagacctttcaccggtcatatt |
18989089 |
T |
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| Q |
271 |
tgacatctatcgtttcacatgacaataaatttttgaattgccatttagattattg |
325 |
Q |
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|| ||||||| ||||||||||||||||| |||||||||| || |||||||||||| |
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| T |
18989088 |
tggcatctattgtttcacatgacaataagtttttgaatttccttttagattattg |
18989034 |
T |
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