View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_low_62 (Length: 338)

Name: NF21097_low_62
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21097_low_62
NF21097_low_62
[»] chr3 (19 HSPs)
chr3 (12-321)||(7750861-7751170)
chr3 (12-321)||(6590310-6590619)
chr3 (12-301)||(6917882-6918171)
chr3 (60-310)||(6143127-6143377)
chr3 (60-248)||(13269625-13269813)
chr3 (63-313)||(6900890-6901140)
chr3 (83-312)||(6246139-6246368)
chr3 (65-308)||(6720926-6721166)
chr3 (46-303)||(8567924-8568181)
chr3 (65-312)||(6169722-6169969)
chr3 (118-250)||(6266557-6266689)
chr3 (67-230)||(6849828-6849991)
chr3 (61-200)||(8455501-8455640)
chr3 (170-312)||(6238585-6238727)
chr3 (254-304)||(6883527-6883577)
chr3 (60-117)||(6883345-6883402)
chr3 (92-216)||(8472406-8472530)
chr3 (61-200)||(6553481-6553620)
chr3 (61-200)||(6736837-6736976)
[»] scaffold0425 (2 HSPs)
scaffold0425 (67-230)||(12936-13099)
scaffold0425 (61-200)||(6520-6659)
[»] chr7 (1 HSPs)
chr7 (68-215)||(6572356-6572503)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 321
Target Start/End: Original strand, 7750861 - 7751170
Alignment:
Q  12 ctcgcttaataaaaagtgaaagatagcgtcacacctttccctttgatcgtgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatg 111  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7750861 ctcgcttaataaaaagtgaaagatagcgtcgcatctttccctttgatcgtgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatg 7750960  T
Q  112 tttgagatcatcaagccaatttttcacgtttcggtgttggtactcctttatatctgcatcatccagtacttcattgatagaatctagtgtgatttcaagt 211  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7750961 tttgagatcatcaagccaattcttcacgtttcggtgttggtactcctttatatctgcatcatccagtacttcattgatagaatctagtgtgatttcaagt 7751060  T
Q  212 tttttcgacagcctttcatggaagtagtctctgaaatctcgagaagccaacctctctcgaatcacttgaaagacagacgaaagaaatgccccaccaacaa 311  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7751061 tttttccacagcctttcatggaagtagtctctgaaatcttgagaagccaacctctctcgaatcacttgaaagacagacgaaagaaatgccccaccaacaa 7751160  T
Q  312 cccctgccat 321  Q
    ||||||||||    
T  7751161 cccctgccat 7751170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 6590619 - 6590310
Alignment:
Q  12 ctcgcttaataaaaagtgaaagatagcgtcacacctttccctttgatcgtgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatg 111  Q
    |||| ||||||||| |||||||| ||||||  | ||| ||||||| | |||| |||  |||||||||||| |||||||||||||||||  |||| || ||    
T  6590619 ctcgattaataaaacgtgaaagaaagcgtcgtatcttgccctttggttgtgcgtcatcagcaatcacatccaatagttgctctaattcaaatacctcgtg 6590520  T
Q  112 tttgagatcatcaagccaatttttcacgtttcggtgttggtactcctttatatctgcatcatccagtacttcattgatagaatctagtgtgatttcaagt 211  Q
    ||||| |||||||||||| ||   |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  6590519 tttgatatcatcaagccatttccgcacgtttcggtgttggtattcctttacatctgcttcatccagtacttcattgatagaatccagtgtgatttcaagt 6590420  T
Q  212 tttttcgacagcctttcatggaagtagtctctgaaatctcgagaagccaacctctctcgaatcacttgaaagacagacgaaagaaatgccccaccaacaa 311  Q
    ||||||  |||| ||||||||||||||| ||||||||||| |||||||||| |||| |||||||||  ||||||||||||||||||||||||| ||| ||    
T  6590419 tttttccgcagcatttcatggaagtagtttctgaaatctctagaagccaacttctcacgaatcactaaaaagacagacgaaagaaatgccccatcaataa 6590320  T
Q  312 cccctgccat 321  Q
    ||||||||||    
T  6590319 cccctgccat 6590310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 6917882 - 6918171
Alignment:
Q  12 ctcgcttaataaaaagtgaaagatagcgtcacacctttccctttgatcgtgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatg 111  Q
    |||| ||| |||||||||||||| || ||  || | | ||||||| | |||| ||||||| ||||||||| |  ||||| |||| ||| ||||| || ||    
T  6917882 ctcgattactaaaaagtgaaagaaagtgttgcatcctgccctttggttgtgcgtcagtagaaatcacatctagaagttggtctacttcatatacctcgtg 6917981  T
Q  112 tttgagatcatcaagccaatttttcacgtttcggtgttggtactcctttatatctgcatcatccagtacttcattgatagaatctagtgtgatttcaagt 211  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||| |||||  ||||||||||| || ||||||||||||||||| | |||||||||||      
T  6917982 tttgagatcatcaagccaattcttcacgtctcggttttggtactgctttacctctgcatcatcaagcacttcattgatagaatccaatgtgatttcaaaa 6918081  T
Q  212 tttttcgacagcctttcatggaagtagtctctgaaatctcgagaagccaacctctctcgaatcacttgaaagacagacgaaagaaatgcc 301  Q
     ||||   || ||  |||| |||||||||||||||||  |  |||| |||||||||  |||| |||||||| ||| ||||||||||||||    
T  6918082 attttaaccaacccatcatcgaagtagtctctgaaataacttgaagacaacctctcatgaatgacttgaaacacatacgaaagaaatgcc 6918171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 60 - 310
Target Start/End: Original strand, 6143127 - 6143377
Alignment:
Q  60 gtgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactcctt 159  Q
    |||| ||||||||||| ||||| ||||||||||| | ||| ||||   ||||  | | ||||||||||||||| |||||| || | | |||||||| |||    
T  6143127 gtgcgtcagtagcaataacatccaatagttgctccacttcatataacacatgactcacatcatcaagccaattcttcacggtttgattttggtactgctt 6143226  T
Q  160 tatatctgcatcatccagtacttcattgatagaatctagtgtgatttcaagttttttcgacagcctttcatggaagtagtctctgaaatctcgagaagcc 259  Q
    | | ||||  |||||||| || | ||||||||| |  |||||||||||||||||||||  ||||| ||||||||| |||||||||||||||   ||||      
T  6143227 tgtctctgtgtcatccagcacataattgatagacttgagtgtgatttcaagttttttcaccagcccttcatggaaatagtctctgaaatctgttgaagtt 6143326  T
Q  260 aacctctctcgaatcacttgaaagacagacgaaagaaatgccccaccaaca 310  Q
    ||| |||| | ||||| ||||| |||||  ||||||||||||| |||||||    
T  6143327 aacttctcacaaatcaattgaatgacaggggaaagaaatgccctaccaaca 6143377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 248
Target Start/End: Complemental strand, 13269813 - 13269625
Alignment:
Q  60 gtgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactcctt 159  Q
    |||| |||||| |||||||||| ||||||||||||||||||||||| ||||   ||| ||||||||||||||| | ||||  | | | |||||||| |||    
T  13269813 gtgcgtcagtaacaatcacatccaatagttgctctaattcgtatacctcattactgacatcatcaagccaattctccacgcgttgattttggtactgctt 13269714  T
Q  160 tatatctgcatcatccagtacttcattgatagaatctagtgtgatttcaagttttttcgacagcctttcatggaagtagtctctgaaat 248  Q
      | ||||| |||||||| |  | ||||||||| |  |||||||||||||||||||||  ||||| ||||||||| |||||||||||||    
T  13269713 agtctctgcgtcatccagcaaataattgatagacttcagtgtgatttcaagttttttcaccagcccttcatggaaatagtctctgaaat 13269625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 313
Target Start/End: Original strand, 6900890 - 6901140
Alignment:
Q  63 catcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactcctttat 162  Q
    ||||||||||||||| ||| |||| || ||||| ||| | ||| ||| |||||||||||| |||||||||  |||||||   ||   |||||| ||||      
T  6900890 catcagtagcaatcatatccaatattttctctacttcctctacctcaagtttgagatcattaagccaattcctcacgttcttgttacggtactgctttgc 6900989  T
Q  163 atctgcatcatccagtacttcattgatagaatctagtgtgatttcaagttttttcgacagcctttcatggaagtagtctctgaaatctcgagaagccaac 262  Q
     | ||| |||||||| |||| |||||||||| | |||||||||||||||||||||  ||    | |||||| ||| |||||| |||||   ||||| |||    
T  6900990 ctttgcgtcatccagcactttattgatagaaaccagtgtgatttcaagttttttctccacatctacatggacgtaatctctgcaatctgttgaagctaac 6901089  T
Q  263 ctctctcgaatcacttgaaagacagacgaaagaaatgccccaccaacaacc 313  Q
    |||||   ||||||| ||||||||||||||||||||| |||||||||||||    
T  6901090 ctctcaaaaatcactcgaaagacagacgaaagaaatgtcccaccaacaacc 6901140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 83 - 312
Target Start/End: Original strand, 6246139 - 6246368
Alignment:
Q  83 aatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactcctttatatctgcatcatccagtactt 182  Q
    |||||||| |||||||||||||| ||||   |   |||||||| |||||| ||||||||| | |  | ||||| |||| | ||||| |||||||| ||||    
T  6246139 aatagttgatctaattcgtatacctcattactcgcatcatcaacccaattcttcacgttttgattctcgtacttctttgtctctgcgtcatccagcactt 6246238  T
Q  183 cattgatagaatctagtgtgatttcaagttttttcgacagcctttcatggaagtagtctctgaaatctcgagaagccaacctctctcgaatcacttgaaa 282  Q
     |||||||||| | | |||||||||||||||||||   ||| ||||||||| |||||| |||||||||   ||||| || ||||| | ||||| |||||     
T  6246239 gattgatagaaaccaatgtgatttcaagttttttcacaagcttttcatggaggtagtcactgaaatctgttgaagctaatctctcacaaatcaattgaat 6246338  T
Q  283 gacagacgaaagaaatgccccaccaacaac 312  Q
    ||| |  ||||||||||||| || ||||||    
T  6246339 gacgggggaaagaaatgcccgacgaacaac 6246368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 6721166 - 6720926
Alignment:
Q  65 tcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactcctttatat 164  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| |||||||||| | ||||      ||  |||||||| |  | |||    
T  6721166 tcagtagcaatcacatccaatagttgctctacttcgtatacctcatgtttgagattatcaagccaactcttca------gggtttggtactgcaatgtat 6721073  T
Q  165 ctgcatcatccagtacttcattgatagaatctagtgtgatttcaagttttttcgacagcctttcatggaagtagtctctgaaatctcgagaagccaacct 264  Q
    |||| |||||||  ||||  || |||||| | |||| |||||||||| |||||  ||||||| |   ||||| |  ||||||||| |  ||||| |||||    
T  6721072 ctgcgtcatccatcacttttttaatagaaaccagtgcgatttcaagtcttttcatcagccttgcgccgaagttgagtctgaaatcacttgaagctaacct 6720973  T
Q  265 ctctcgaatcacttgaaagaca---gacgaaagaaatgccccaccaa 308  Q
    |||  ||||||||||||| |||   | ||||||||||||||||||||    
T  6720972 ctcaagaatcacttgaaacacaggtggcgaaagaaatgccccaccaa 6720926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 303
Target Start/End: Complemental strand, 8568181 - 8567924
Alignment:
Q  46 ctttccctttgatcgtgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcgg 145  Q
    ||||||||||  | ||||||  |||||||| | ||| ||||||||||| | ||| ||||| |||||||| || | || |||||| || ||||| | |  |    
T  8568181 ctttccctttctttgtgcattggtagcaataatatccaatagttgctcaacttcatatacctcatgttttagtttatgaagccagttcttcacatatgtg 8568082  T
Q  146 tgttggtactcctttatatctgcatcatccagtacttcattgatagaatctagtgtgatttcaagttttttcgacagcctttcatggaagtagtctctga 245  Q
    | |||||||| |||| | |||||||||||||  | || ||| |||||||  |||||||||||||||| || |  || || || | | ||| || ||||||    
T  8568081 ttttggtactgctttgtttctgcatcatccaacaattgatttatagaattaagtgtgatttcaagttcttccaccaaccctttacgaaagcagcctctga 8567982  T
Q  246 aatctcgagaagccaacctctctcgaatcacttgaaagacagacgaaagaaatgcccc 303  Q
    ||||||  |||||||||||||    | |||||||||||||||||||||||||||||||    
T  8567981 aatctcttgaagccaacctctgaatagtcacttgaaagacagacgaaagaaatgcccc 8567924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 312
Target Start/End: Original strand, 6169722 - 6169969
Alignment:
Q  65 tcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactcctttatat 164  Q
    ||||||||||| ||||| || |||||||||| ||||||||  | ||   ||| |||||||| |||||| || |||| | | | || ||||| |||| | |    
T  6169722 tcagtagcaatgacatccaacagttgctctacttcgtatatcttattcctgatatcatcaacccaattctttacgtctagattttcgtactgctttgtct 6169821  T
Q  165 ctgcatcatccagtacttcattgatagaatctagtgtgatttcaagttttttcgaca-gcctttcatggaagtagtctctgaaatctcgagaagccaacc 263  Q
    |||| ||||| || |||| |||||| ||| | | ||||||||||||||||||| ||| || |||||||||||||||| || ||||||   ||||| || |    
T  6169822 ctgcgtcatcaagcactttattgattgaaaccaatgtgatttcaagttttttc-acatgcttttcatggaagtagtcactcaaatctgttgaagctaatc 6169920  T
Q  264 tctctcgaatcacttgaaagacagacgaaagaaatgccccaccaacaac 312  Q
    |||| | ||||| ||||| ||| |  ||||||||||||| || ||||||    
T  6169921 tctcacaaatcaattgaatgacgggggaaagaaatgcccgacgaacaac 6169969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 250
Target Start/End: Original strand, 6266557 - 6266689
Alignment:
Q  118 atcatcaagccaatttttcacgtttcggtgttggtactcctttatatctgcatcatccagtacttcattgatagaatctagtgtgatttcaagttttttc 217  Q
    |||||||| |||||| ||||||||| | |  | ||||| |||| | ||||| |||||||| |||| |||||||||| | |||||||||||||||||||||    
T  6266557 atcatcaacccaattcttcacgttttgattctcgtacttctttgtctctgcgtcatccagcacttgattgatagaaaccagtgtgatttcaagttttttc 6266656  T
Q  218 gacagcctttcatggaagtagtctctgaaatct 250  Q
      ||||  |||| ||| |||| ||| |||||||    
T  6266657 cccagctcttcacggacgtagcctccgaaatct 6266689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 230
Target Start/End: Complemental strand, 6849991 - 6849828
Alignment:
Q  67 agtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactcctttatatct 166  Q
    |||||| |||||||| ||||||||||| | ||||||||| |||||| ||   | |||||||||| |  ||| |||| ||  |||  ||| |||| | |||    
T  6849991 agtagccatcacatccaatagttgctcaacttcgtatacctcatgtatggagtgatcaagccaagtcctcatgtttgggctttgacactgctttgtctct 6849892  T
Q  167 gcatcatccagtacttcattgatagaatctagtgtgatttcaagttttttcgacagcctttcat 230  Q
    ||| |||||||  |||||||||||||||  ||| |||||||||||||||||  ||||| |||||    
T  6849891 gcaacatccagctcttcattgatagaattcagtttgatttcaagttttttcagcagcccttcat 6849828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 200
Target Start/End: Original strand, 8455501 - 8455640
Alignment:
Q  61 tgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactccttt 160  Q
    ||||||||||| |||| |||| |||||||| |||  ||| || ||| ||||||| |||||||||||||| || ||||| | |  || |||||||| ||||    
T  8455501 tgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgcttt 8455600  T
Q  161 atatctgcatcatccagtacttcattgatagaatctagtg 200  Q
    || ||||| || || |||||||  ||||||||||| ||||    
T  8455601 atctctgcttcgtctagtacttggttgatagaatcaagtg 8455640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 312
Target Start/End: Original strand, 6238585 - 6238727
Alignment:
Q  170 tcatccagtacttcattgatagaatctagtgtgatttcaagttttttcgacagcctttcatggaagtagtctctgaaatctcgagaagccaacctctctc 269  Q
    |||||||| |||| ||||||||| |  |||||||||||||||||||||   ||||  ||||  ||||||||||||||||||   ||||| ||||||||      
T  6238585 tcatccagcactttattgatagacttcagtgtgatttcaagttttttcactagcccatcattcaagtagtctctgaaatctgttgaagctaacctctcat 6238684  T
Q  270 gaatcacttgaaagacagacgaaagaaatgccccaccaacaac 312  Q
     ||||| ||||| || ||  ||||||||||||  |||||||||    
T  6238685 aaatcaattgaatgataggggaaagaaatgcctgaccaacaac 6238727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 6883527 - 6883577
Alignment:
Q  254 gaagccaacctctctcgaatcacttgaaagacagacgaaagaaatgcccca 304  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||||||||||    
T  6883527 gaagctaacctctcacgaatcacttgaaaggcagacgaaagaaatgcccca 6883577  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 6883345 - 6883402
Alignment:
Q  60 gtgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgag 117  Q
    |||| ||||| ||||||||||| |||||||| |||||||||||||||| |||||||||    
T  6883345 gtgcgtcagtcgcaatcacatccaatagttgatctaattcgtatacataatgtttgag 6883402  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 216
Target Start/End: Original strand, 8472406 - 8472530
Alignment:
Q  92 tctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactcctttatatctgcatcatccagtacttcattgatag 191  Q
    |||| ||| ||||| |||||||| |||  |||||||||||| || || ||| |||  ||||||| |||| | |||||||||||||  | || ||||||||    
T  8472406 tctacttcatatacctcatgttttagacgatcaagccaattcttaacattttggttctggtacttctttgtctctgcatcatccaacaattgattgatag 8472505  T
Q  192 aatctagtgtgatttcaagtttttt 216  Q
    |||  | ||||||||| ||||||||    
T  8472506 aattcaatgtgatttcgagtttttt 8472530  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 6553620 - 6553481
Alignment:
Q  61 tgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactccttt 160  Q
    ||||||||||| |||| |||| |||||||| |||   || || ||| ||||||| || ||||||||||| || ||||| | |  || |||||||| ||||    
T  6553620 tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt 6553521  T
Q  161 atatctgcatcatccagtacttcattgatagaatctagtg 200  Q
    || ||||| || || |||||||  ||||||||||| ||||    
T  6553520 atctctgcttcgtctagtacttggttgatagaatcaagtg 6553481  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 200
Target Start/End: Original strand, 6736837 - 6736976
Alignment:
Q  61 tgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactccttt 160  Q
    ||||||||||| |||| |||| |||||||| |||  ||| || | | ||||||| || ||||||||||| || ||||| | |  || |||||||| ||||    
T  6736837 tgcatcagtagaaatctcatccaatagttggtctgcttcataaagaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt 6736936  T
Q  161 atatctgcatcatccagtacttcattgatagaatctagtg 200  Q
    || ||||| || || |||||||  ||||||||||| ||||    
T  6736937 atctctgcttcgtctagtacttggttgatagaatcaagtg 6736976  T

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Target: scaffold0425 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 230
Target Start/End: Complemental strand, 13099 - 12936
Alignment:
Q  67 agtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactcctttatatct 166  Q
    |||||| |||||||| ||||||||||||| ||||||||| |||||| ||   | ||||||||||||  ||| |||| ||  |||  ||| |||| | |||    
T  13099 agtagccatcacatccaatagttgctctacttcgtatacctcatgtatggagtgatcaagccaattcctcatgtttgggctttgacactgctttgtctct 13000  T
Q  167 gcatcatccagtacttcattgatagaatctagtgtgatttcaagttttttcgacagcctttcat 230  Q
    ||| |||||||  |||||||||||||||  ||| |||||||||||||||||  ||||| |||||    
T  12999 gcaacatccagctcttcattgatagaattcagtttgatttcaagttttttcagcagcccttcat 12936  T

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Target: scaffold0425; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 6659 - 6520
Alignment:
Q  61 tgcatcagtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactccttt 160  Q
    ||||||||||| |||| |||| |||||||| |||   || || ||| ||||||| || ||||||||||| || ||||| | |  || |||||||| ||||    
T  6659 tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt 6560  T
Q  161 atatctgcatcatccagtacttcattgatagaatctagtg 200  Q
    || ||||| || || |||||||  ||||||||||| ||||    
T  6559 atctctgcttcgtctagtacttggttgatagaatcaagtg 6520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 215
Target Start/End: Complemental strand, 6572503 - 6572356
Alignment:
Q  68 gtagcaatcacatcgaatagttgctctaattcgtatacatcatgtttgagatcatcaagccaatttttcacgtttcggtgttggtactcctttatatctg 167  Q
    ||||||||| |||| || | ||| |||| ||| ||||| |||||||| |||  |||||||||| | ||||||||| ||| ||||||||  ||| | ||||    
T  6572503 gtagcaatctcatccaacaattgatctacttcatatacctcatgttttagacgatcaagccaaatcttcacgtttgggttttggtactgttttgtctctg 6572404  T
Q  168 catcatccagtacttcattgatagaatctagtgtgatttcaagttttt 215  Q
    |||||||||  | || |||||||||||  | |||||||||||||||||    
T  6572403 catcatccaacaattgattgatagaattcattgtgatttcaagttttt 6572356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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