View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_low_63 (Length: 335)
Name: NF21097_low_63
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_63 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 2176066 - 2176375
Alignment:
| Q |
1 |
taatcaacacgtgttccttcatattaaacggccccgggttcaatgacaacttttttgtcccgaaccctgggattttgaacttcgtggttggcagaatagc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2176066 |
taatcaacacatgttccttcatattaaacggccccgggttcaatgacaacttttttgtcccgaaccctgggattctgaacttcgtggttggcagaatagc |
2176165 |
T |
|
| Q |
101 |
cgccatgaagtgacctatagggagtgtagctacctgaacggttatgagagtgatgatgagtggttctgtacggtaagcgaaaaattggttgaggaaagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2176166 |
cgccatgaagtgacctatagggagtgtagctacctgaacggttatgagagtgatgatgagtggttctgtacggtaagcgaagaattggttgaggaaagaa |
2176265 |
T |
|
| Q |
201 |
aggagtgagcatgaaatgagacctaagaaccacatacggaatgtccatactggttgggttgggtcgtcggtgtttgttacggttaaacgaacttcttcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2176266 |
aggagtgagcatgaaatgagacctaagaaccacatacggaatgtccatactggttgggttgggtcgtcggtgtttgttacggttaaacgaacttcttcaa |
2176365 |
T |
|
| Q |
301 |
tgggggagat |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
2176366 |
tgggggagat |
2176375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 271
Target Start/End: Complemental strand, 36900189 - 36900038
Alignment:
| Q |
120 |
gggagtgtagctacctgaacggttatgagagtgatgatgagtggttctgtacggtaagcgaaaaattggttgaggaaagaaaggagtgagcatgaaatga |
219 |
Q |
| |
|
|||||||| || || |||||||| || |||| |||||||||||||| || ||||| ||||| ||||||||||| || || ||||| | |||||| | | |
|
|
| T |
36900189 |
gggagtgtggcgacttgaacggtgatttgagttatgatgagtggttcggttcggtatgcgaagaattggttgagaaaggagaggagagcgcatgagagaa |
36900090 |
T |
|
| Q |
220 |
gacctaagaaccacatacggaatgtccatactggttgggttgggtcgtcggt |
271 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||| | |||||||||||||| |
|
|
| T |
36900089 |
gacctagaaaccacatgcggaaggtccatactggaagtgttgggtcgtcggt |
36900038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University