View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_low_64 (Length: 331)
Name: NF21097_low_64
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_64 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 160 - 323
Target Start/End: Original strand, 53677749 - 53677912
Alignment:
| Q |
160 |
tagttagtacatgaatttggtagccatgagaaagtgaaagcgacgaagagtgtcccaaaagagagtagggtcgttaacgacgtcgttgtgagaggcgagt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53677749 |
tagttagtacatgaatttggtagccatgagaaagtgaaagcgacgaagagtgtcccaaaagagagtagggtcgttaacgacgtcgttgtgagaggcgagt |
53677848 |
T |
|
| Q |
260 |
gggggaggatagtgtttggcttcgtcgtcgtcgccggagttcttgcttctcaccgctgatgatg |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
53677849 |
gggggaggatagtgtttggcttcgtcgtcgttgccggagttcttgcttctcaccgccgatgatg |
53677912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 53677605 - 53677706
Alignment:
| Q |
16 |
gtaacttccacgtagagaacgtgcaaatcaagctccttaccaccaatcacaggaatcctatgcaaaatgaaatcacatttataatagtactttgatgttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53677605 |
gtaacttccacgtagagaacgtgcaaatcaagctccttaccaccaatcacaggaatcctatgcaaaatgaaatcacatttataatagtactttgattttg |
53677704 |
T |
|
| Q |
116 |
tt |
117 |
Q |
| |
|
|| |
|
|
| T |
53677705 |
tt |
53677706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University