View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_low_7 (Length: 672)
Name: NF21097_low_7
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_7 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 18 - 672
Target Start/End: Complemental strand, 2214970 - 2214331
Alignment:
| Q |
18 |
aaggagtcagctact--atatcttgcatcatgctaggagtcctgcatcgcaagaatagaacgacatgccaaaaagaccgattttgttagcctcgcattgc |
115 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2214970 |
aaggagtcagctactgtatatcttgcaacatgctaggagtcatgcatcgcaagaatagaacgacatgccaaaaggaccgattttgttagcctcgcattgc |
2214871 |
T |
|
| Q |
116 |
gagccaatgtttcctacaacttaggaaatgtacgcttataaatattgaacccctaggttagtagaaaacatcttttgacgagcacacaaaggcagaaact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2214870 |
gagccaatgtttcctacaacttaggaaatgtacgcttataaatattgaacccttaggttagtagaaaacatcttttgacgagcacacaaaggcagaaact |
2214771 |
T |
|
| Q |
216 |
caatttcgaaaggattggtgcgatcaaagccattcgggagccaaagaatcatcaactgacgatcttttctcatgtttactttggcgttcttaaacattca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| |
|
|
| T |
2214770 |
caatttcgaaaggattggtgcgatcaaagccatttaggagccaaagaatcatcaactgacgatcttttctcatgcttactttggcgttcttaaataatca |
2214671 |
T |
|
| Q |
316 |
agggtcatgggttcacctaaaatattaacgagtagtaagtgttgaagagagttactgaccaagacactagcttaactattttgttcaatggtatttaaat |
415 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2214670 |
agggtcatgggctcacctaaaatattaacgag-----------------agttactgaccaagacactagcttaactattttgttcaacggtatttaaat |
2214588 |
T |
|
| Q |
416 |
caagtaatcaacaatattttgttcataacttgtagttataatagcttgcatcagtggtgttgtctatgggaatgacatttttcacaacactccttattcc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
2214587 |
caagtaatcaacaatattttgttcataacttgtagttataatagcttgcatcagtggtgttgtctatgggaatgacatttttcacaaaactcctaattcc |
2214488 |
T |
|
| Q |
516 |
tatcattatttttaccaaaagttaatggcttgaaaaggtgcaaagacttttatagcaaccaaatctaggacactagaaatcatggttcgataaactccac |
615 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2214487 |
tatcattatttttaccaaaaattaatggcttgaaaaggtgcaaagacttttatagcaaccaaatctaggacactagaaatcatggttcgataaactccac |
2214388 |
T |
|
| Q |
616 |
ctgtcgtggagacaatagtaccacttcgtcaaccatcatcaatgataattcctattc |
672 |
Q |
| |
|
|| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2214387 |
ctctcgtggagacattagtaccacttcctcaaccatcatcaatgataattcctattc |
2214331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 1595157 - 1595226
Alignment:
| Q |
300 |
cgttcttaaacattcaagggtcatgggttcacctaaaatattaacgagtagtaagtgttgaagagagtta |
369 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||| ||| |||| || ||| | |||||||||||||||||| |
|
|
| T |
1595157 |
cgttcttaaaccttcaagggttatgggctcacataagatatcaaggagcaacaagtgttgaagagagtta |
1595226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 31077356 - 31077529
Alignment:
| Q |
97 |
tttgttagcctcgcattgcgagccaatgtttcctacaacttag-gaaatgtacgcttataaatattgaacccctaggttagtagaaaac-atcttttgac |
194 |
Q |
| |
|
|||||||| ||||||| ||||| |||| |||||| ||||||| ||||||| || ||||||||| |||||||||||| | | ||||| | ||||| || |
|
|
| T |
31077356 |
tttgttagactcgcatcgcgagtcaat--ttcctaaaacttagagaaatgtgtgcctataaatatggaacccctaggtcaatggaaaaataccttttaac |
31077453 |
T |
|
| Q |
195 |
gagcacacaaaggcagaaactcaatttcgaaaggattggtgcgatcaaagccattcgggagccaaagaatcatcaa |
270 |
Q |
| |
|
|||| || |||||| |||| ||||| |||||||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
31077454 |
aagcagacgaaggcataaacatgatttcttaaggattgaagcgatcatagccattcgggagccaaagaattatcaa |
31077529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 426
Target Start/End: Original strand, 17838866 - 17838904
Alignment:
| Q |
388 |
taactattttgttcaatggtatttaaatcaagtaatcaa |
426 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
17838866 |
taactattttgttcaaaggtattgaaatcaagtaatcaa |
17838904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 21489842 - 21489758
Alignment:
| Q |
295 |
tttggcgttcttaaacattcaagggtcatgggttcacctaaaatattaacgagtagtaagtgttgaagagagttactgaccaaga |
379 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| ||||| || | |||| ||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
21489842 |
tttggcgttcttaaaccatcaagggttatgggctcaccgaagacattagggagaagtaaccgttgaagagagttagtgaccaaga |
21489758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 19840797 - 19840733
Alignment:
| Q |
361 |
agagagttactgaccaagacactagcttaactattttgttcaatggtatttaaatcaagtaatca |
425 |
Q |
| |
|
|||| |||| ||||||||||| | || |||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
19840797 |
agagtgttagtgaccaagacattggcctaactattttgttcaaaagtattggaatcaagtaatca |
19840733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 29572684 - 29572593
Alignment:
| Q |
180 |
aaaacatcttttgacgagcacacaaaggcagaaactcaatttcgaaaggattggtgcgatcaaagccattcgggagccaaagaatcatcaac |
271 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||||| | ||||| |||||||| |||| | | | ||||||||||||| ||||||||||| |
|
|
| T |
29572684 |
aaaacaccttttgacgagcatacaaaggtagaaacacgatttccgaaggattgaagcgaccggaacaattcgggagccaaggaatcatcaac |
29572593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 426
Target Start/End: Original strand, 16802265 - 16802334
Alignment:
| Q |
357 |
ttgaagagagttactgaccaagacactagcttaactattttgttcaatggtatttaaatcaagtaatcaa |
426 |
Q |
| |
|
||||||||||||| ||||||||||| | | | |||||||| ||||| ||| || ||||||||||||||| |
|
|
| T |
16802265 |
ttgaagagagttagtgaccaagacattggtctgactattttattcaaaggttttaaaatcaagtaatcaa |
16802334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 426
Target Start/End: Original strand, 16841551 - 16841620
Alignment:
| Q |
357 |
ttgaagagagttactgaccaagacactagcttaactattttgttcaatggtatttaaatcaagtaatcaa |
426 |
Q |
| |
|
||||||||||||| ||||||||||| | | | |||||||| ||||| ||| || ||||||||||||||| |
|
|
| T |
16841551 |
ttgaagagagttagtgaccaagacattggtctgactattttattcaaaggttttaaaatcaagtaatcaa |
16841620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 35948244 - 35948136
Alignment:
| Q |
295 |
tttggcgttcttaaacattcaagggtcatgggttcacctaaaatattaacgagtagtaagtgttgaagagagttactgaccaagacactagcttaactat |
394 |
Q |
| |
|
||||| |||||||||| |||||| || ||||| ||| |||| | |||| ||| || || |||||||| |||| ||||||||||| | |||||||||| |
|
|
| T |
35948244 |
tttggtgttcttaaaccttcaagagttatgggctcatctaagacattagggagcagcaataattgaagagtgttagtgaccaagacattggcttaactat |
35948145 |
T |
|
| Q |
395 |
tttgttcaa |
403 |
Q |
| |
|
|||| |||| |
|
|
| T |
35948144 |
tttgatcaa |
35948136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 410
Target Start/End: Complemental strand, 42473317 - 42473263
Alignment:
| Q |
356 |
gttgaagagagttactgaccaagacactagcttaactattttgttcaatggtatt |
410 |
Q |
| |
|
|||||||||| ||| |||||| |||| |||| |||||||||||||||| |||||| |
|
|
| T |
42473317 |
gttgaagagaattagtgaccatgacattagcctaactattttgttcaaaggtatt |
42473263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University