View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_76 (Length: 281)
Name: NF21097_low_76
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_76 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 50 - 261
Target Start/End: Complemental strand, 28467018 - 28466808
Alignment:
| Q |
50 |
aagattcaattttccctacaaaaatctctattgaaattacaaagatcaaatataaaagagattaaaaattcaacctgatggccaacatcccatatgatct |
149 |
Q |
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| T |
28467018 |
aagattcaattttccctacaaaaatctctattgaaattacaa-gataaaatataaaagagattaaaagttcaacctgatggccaacatcccatatgatct |
28466920 |
T |
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| Q |
150 |
tgtcatccggagtgtcgaaaacatgatgaagagcaacagataactccaccactcccaagcttgagctaagatgcccaccagtgtctgacacactgtgtac |
249 |
Q |
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| T |
28466919 |
tgtcatccggagtgtcgaaaacatgatgaagagcaactgataactccaccactcccaagcttgagctaagatgaccaccggtgtctgacacactgtgtac |
28466820 |
T |
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| Q |
250 |
aatgtcagccct |
261 |
Q |
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|||||||||||| |
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| T |
28466819 |
aatgtcagccct |
28466808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 28475588 - 28475358
Alignment:
| Q |
11 |
aactgaaattttattaccaaagaatttctttctacatacaagattcaattttccctacaaaaatctctattgaaattacaaagatcaaatataaaa-gag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
28475588 |
aactgaaattttattaccaaagaatttctttctacatacaagattcaattttccctac---------------------aaagatcaaatataaaatgag |
28475510 |
T |
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| Q |
110 |
attaaaaattcaacctgatggccaacatcccatatgatcttgtcatccggagtgtcgaaaacatgatgaagagcaacagataactccaccactcccaagc |
209 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28475509 |
attaaaagttcaacctgatggccaacatcccatatgatcttgtcatccggagtgtcgaaaacatgatgaagagcaactgataactccaccactcccaagc |
28475410 |
T |
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| Q |
210 |
ttgagctaagatgcccaccagtgtctgacacactgtgtacaatgtcagccct |
261 |
Q |
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| T |
28475409 |
ttgagctaagatgcccaccagtgtctgacacactgtgtacaatgtcagccct |
28475358 |
T |
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