View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_low_77 (Length: 279)

Name: NF21097_low_77
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21097_low_77
NF21097_low_77
[»] chr8 (4 HSPs)
chr8 (14-250)||(37061374-37061604)
chr8 (75-188)||(37068819-37068932)
chr8 (228-264)||(37068952-37068988)
chr8 (71-115)||(41614789-41614833)
[»] chr2 (4 HSPs)
chr2 (14-115)||(11510898-11510999)
chr2 (71-117)||(7630359-7630405)
chr2 (26-115)||(36987163-36987252)
chr2 (12-112)||(4908737-4908837)
[»] chr6 (3 HSPs)
chr6 (12-115)||(29240489-29240592)
chr6 (71-115)||(33141803-33141847)
chr6 (44-115)||(5724700-5724770)
[»] chr3 (4 HSPs)
chr3 (44-115)||(33548188-33548259)
chr3 (12-112)||(41115399-41115499)
chr3 (12-115)||(43987588-43987692)
chr3 (71-115)||(47356341-47356385)
[»] chr1 (3 HSPs)
chr1 (44-115)||(32088643-32088713)
chr1 (12-115)||(41516932-41517035)
chr1 (83-115)||(441740-441772)
[»] chr7 (3 HSPs)
chr7 (12-113)||(45369109-45369210)
chr7 (71-115)||(12306679-12306723)
chr7 (71-115)||(48290336-48290380)
[»] chr4 (2 HSPs)
chr4 (72-119)||(52977061-52977108)
chr4 (59-115)||(41058871-41058927)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 37061374 - 37061604
Alignment:
Q  14 aattgtagaggcaaaaactacaaattccatcttcaagtaagaataaattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaatcaa 113  Q
    ||||||||||||||||||||||  ||| ||||||||||  |||||||||||||| | |||||||| | ||||||||||||||||||||| |||| |||||    
T  37061374 aattgtagaggcaaaaactacactttctatcttcaagttggaataaattttgtaggcaaaatcaactatacttgaaagcatccaaacatgtcaatatcaa 37061473  T
Q  114 ttataaatcggaacatcgctagaatcaatttcctctcctccaaaattgaaccaaacaagcac--agacttttattccttctttatgaaccttttaataag 211  Q
    |||||        || ||||| |||||| ||  ||||||||||||| |||||||||| ||||  ||| || |||||||||||||||||||||||| |||     
T  37061474 ttata--------caccgctaaaatcaaatttgtctcctccaaaatggaaccaaacatgcactcagaattctattccttctttatgaaccttttagtaaa 37061565  T
Q  212 cattctaaaacattgaatatttaatattcttacttctct 250  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  37061566 cattctaaaacattgaatatttgatattcttacttctct 37061604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 37068819 - 37068932
Alignment:
Q  75 tcaattgtacttgaaagcatccaaacatatcaaaatcaattataaatcggaacatcgctagaatcaatttcctctcctccaaaattgaaccaaacaagca 174  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37068819 tcaattgtagttgaaagcatccaaacatatcaaaatcaattataaatcggaacatcgctggaatcaatttcctctcctccaaaattgaaccaaacaagca 37068918  T
Q  175 cagacttttattcc 188  Q
    ||||||||||||||    
T  37068919 cagacttttattcc 37068932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 37068952 - 37068988
Alignment:
Q  228 atatttaatattcttacttctctcctgctttgtttgt 264  Q
    |||||||||||||||||||||||||||||||||||||    
T  37068952 atatttaatattcttacttctctcctgctttgtttgt 37068988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 41614833 - 41614789
Alignment:
Q  71 aaaatcaattgtacttgaaagcatccaaacatatcaaaatcaatt 115  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||||    
T  41614833 aaaatcaattctacttgaaaccatccaaacaagtcaaaatcaatt 41614789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 11510999 - 11510898
Alignment:
Q  14 aattgtagaggcaaaaactacaaattccatcttcaagtaagaataaattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaatcaa 113  Q
    ||||||||||||||||||| ||||||| | |||||||  ||||| || | || | | |||||||||| |||| |||| |||||||||||||||||| |||    
T  11510999 aattgtagaggcaaaaactccaaattctagcttcaagatagaatcaaatatggaggcaaaatcaattctactcgaaaacatccaaacatatcaaaaccaa 11510900  T
Q  114 tt 115  Q
    ||    
T  11510899 tt 11510898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 7630405 - 7630359
Alignment:
Q  71 aaaatcaattgtacttgaaagcatccaaacatatcaaaatcaattat 117  Q
    |||||||||| |||||||||||| |||||||| ||||||||||||||    
T  7630405 aaaatcaattctacttgaaagcaaccaaacatgtcaaaatcaattat 7630359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 36987163 - 36987252
Alignment:
Q  26 aaaaactacaaattccatcttcaagtaagaataaattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaatcaatt 115  Q
    |||| ||| |||||| | |||||||| ||||| | || || ||| |||||||||| ||||  |||| |||||||||| ||||||||||||    
T  36987163 aaaagctataaattctaacttcaagttagaatcatttctggaagcaaaatcaattatactcaaaagaatccaaacatgtcaaaatcaatt 36987252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 4908837 - 4908737
Alignment:
Q  12 tcaattgtagaggcaaaaactacaaattccatcttcaagtaagaataaattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaatc 111  Q
    ||||||||||| || ||| |||||||||  | ||| |||| ||||||||||  | | | |||||||||| |||| |||| ||| ||||||| ||||||||    
T  4908837 tcaattgtagaagccaaatctacaaattttagctttaagttagaataaattcggaaggcaaaatcaattctactcgaaaacatacaaacatgtcaaaatc 4908738  T
Q  112 a 112  Q
    |    
T  4908737 a 4908737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 29240489 - 29240592
Alignment:
Q  12 tcaattgtagaggcaaaaactacaaattccatcttcaagtaagaataaattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaatc 111  Q
    |||||||||| |||||||||| ||||||  | |||||||| ||||| || | || | | |||||||||| |||||||||  |||| ||||| ||||||||    
T  29240489 tcaattgtaggggcaaaaacttcaaattttagcttcaagttagaatcaactctggaggtaaaatcaattctacttgaaaatatcctaacatgtcaaaatc 29240588  T
Q  112 aatt 115  Q
    ||||    
T  29240589 aatt 29240592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 33141803 - 33141847
Alignment:
Q  71 aaaatcaattgtacttgaaagcatccaaacatatcaaaatcaatt 115  Q
    |||||||||| ||||||| |||| |||||||||||||||||||||    
T  33141803 aaaatcaattatacttgagagcaaccaaacatatcaaaatcaatt 33141847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 5724700 - 5724770
Alignment:
Q  44 cttcaagtaagaataaattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaatcaatt 115  Q
    ||||||||| |||| ||||||| | | |||||||||| ||| ||||||||||||||||| ||| ||||||||    
T  5724700 cttcaagta-gaatcaattttggaggcaaaatcaattctacctgaaagcatccaaacatgtcagaatcaatt 5724770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 33548259 - 33548188
Alignment:
Q  44 cttcaagtaagaataaattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaatcaatt 115  Q
    |||||||| |||||  |||||| | |||||||||||| ||||| | ||||||||||||| ||||||||||||    
T  33548259 cttcaagttagaatccattttgaaggaaaaatcaattctacttaatagcatccaaacatgtcaaaatcaatt 33548188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 41115399 - 41115499
Alignment:
Q  12 tcaattgtagaggcaaaaa-ctacaaattccatcttcaagtaagaataaattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaat 110  Q
    ||||||||||| || |||| |||||||||| | ||||||||| |||| |||| |  ||| |||||||||| ||||| ||| ||||||||||| |||||||    
T  41115399 tcaattgtagaagccaaaagctacaaattctagcttcaagta-gaatcaattctacaagcaaaatcaattctactttaaaacatccaaacatgtcaaaat 41115497  T
Q  111 ca 112  Q
    ||    
T  41115498 ca 41115499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 43987588 - 43987692
Alignment:
Q  12 tcaattgtag-aggcaaaaactacaaattccatcttcaagtaagaataaattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaat 110  Q
    |||||||||| || |||||||||||||||| | |||| ||| |||||  ||| ||||   |||||||||||||||  | | ||||||||||| |||||||    
T  43987588 tcaattgtaggagtcaaaaactacaaattctagcttccagttagaattgattctgtagacaaaatcaattgtactcaagaacatccaaacatgtcaaaat 43987687  T
Q  111 caatt 115  Q
    |||||    
T  43987688 caatt 43987692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 47356341 - 47356385
Alignment:
Q  71 aaaatcaattgtacttgaaagcatccaaacatatcaaaatcaatt 115  Q
    |||||||||| ||||||| |||| |||||||||||| ||||||||    
T  47356341 aaaatcaattatacttgatagcaaccaaacatatcataatcaatt 47356385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 32088643 - 32088713
Alignment:
Q  44 cttcaagtaagaataaattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaatcaatt 115  Q
    |||||||| ||||| ||||||||| ||||| |||||| ||||||| |||| |||||||| ||||||||||||    
T  32088643 cttcaagttagaatcaattttgtaggaaaa-tcaattctacttgagagcaaccaaacatgtcaaaatcaatt 32088713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 41517035 - 41516932
Alignment:
Q  12 tcaattgtagaggcaaaaactacaaattccatcttcaagtaagaataaattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaatc 111  Q
    ||||||| ||||||||||||| ||||||| | |||||||| ||||| ||||||  | | |||||||||| |||| |||| ||| | || || ||| ||||    
T  41517035 tcaattgaagaggcaaaaactccaaattctaacttcaagttagaatcaattttaaacgcaaaatcaattctactcgaaaacattccaagatgtcataatc 41516936  T
Q  112 aatt 115  Q
    ||||    
T  41516935 aatt 41516932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 441740 - 441772
Alignment:
Q  83 acttgaaagcatccaaacatatcaaaatcaatt 115  Q
    |||||||| ||||||||||||||||||||||||    
T  441740 acttgaaaacatccaaacatatcaaaatcaatt 441772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 45369210 - 45369109
Alignment:
Q  12 tcaattgtagaggcaaaaactacaaattccatcttcaagtaagaataaattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaatc 111  Q
    |||||| ||||||||||| || | ||||| | |||||||| | ||| |||| |  ||| |||||||||| ||||||| | ||||||||||| ||||||||    
T  45369210 tcaattttagaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctcaaaatc 45369111  T
Q  112 aa 113  Q
    ||    
T  45369110 aa 45369109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 12306723 - 12306679
Alignment:
Q  71 aaaatcaattgtacttgaaagcatccaaacatatcaaaatcaatt 115  Q
    |||||||||| ||||||| |||| |||||||| ||||||||||||    
T  12306723 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 12306679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 48290380 - 48290336
Alignment:
Q  71 aaaatcaattgtacttgaaagcatccaaacatatcaaaatcaatt 115  Q
    |||||||||| | ||||||| ||||||||||| ||||||||||||    
T  48290380 aaaatcaattctgcttgaaaacatccaaacatgtcaaaatcaatt 48290336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 52977061 - 52977108
Alignment:
Q  72 aaatcaattgtacttgaaagcatccaaacatatcaaaatcaattataa 119  Q
    ||||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  52977061 aaatcaattttacttgaaagcaatcaaacatatcaaaattaattataa 52977108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 41058927 - 41058871
Alignment:
Q  59 aattttgtaagaaaaatcaattgtacttgaaagcatccaaacatatcaaaatcaatt 115  Q
    ||||||| ||| |||||||||| |||| |||| ||||||||||| ||| ||||||||    
T  41058927 aattttggaagcaaaatcaattttactcgaaaacatccaaacatgtcacaatcaatt 41058871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University