View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_8 (Length: 640)
Name: NF21097_low_8
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_8 |
 | |
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| [»] scaffold0073 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 577; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Original strand, 6989170 - 6989789
Alignment:
| Q |
1 |
tgaggaggagcacagacttggggccttggtagaaaatcaacttcggaaggagatggctgtgtatgaggtatatgaaattcagttcttcgttaagtttgaa |
100 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
6989170 |
tgaggaggaagacagacttggggcctcagtagaaaatcaacttcggaaggagatggctgtgtatgaggtatatgaaattcagttctttgttaagtta-aa |
6989268 |
T |
|
| Q |
101 |
cggtagtaacttttaattgatatttgtgacttgatttcatatttttaaaagcagtcctttttcactatctgcatgttacccttagttttctcgtttatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6989269 |
cggtagtaacttttaattgatatttgtgacttgctttcatatttttaaaagcagtcctttttcactatctgcatgttacccttagttttctcgtttatgt |
6989368 |
T |
|
| Q |
201 |
taagtgctgaaacactatggaatgtgcaattcttgtgaataaagatatctaacatgcattgtattgtggcagaaatttatcttggggatgctcacaaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
6989369 |
taagtgctgaaacactatggaatgtgcaattcttgtgaataaagatatctaacatgcattgtattgtgccagaaatttatcttggggatgctcacaaacc |
6989468 |
T |
|
| Q |
301 |
tcggtagcatgacattagaccgcattcacaatatgctcaaggtattaatggttttacaccttcatgaatgtttggagacataacatgatcaacaagatta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6989469 |
tcggtagcatgacattagaccgcattcacaatatgctcaaggtattaatggttttacaccttcatgaatgtttggagacataacatgatcaacaagatta |
6989568 |
T |
|
| Q |
401 |
attatgtgattctttttataaccgcagatggtttgcattgctgatcccccttatgacaaatcactccaacaattacaaagctttttatctggtctagtct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6989569 |
attatgtgattctttttataaccgcagatggtttgcattgctgatcccccttatgacaaatcactccaacaattacaaagctttttatctggtctagtct |
6989668 |
T |
|
| Q |
501 |
ctgaggagaagttaaaatttcgggatggaacgtatattctaaagtagtgagcttatggaactgaaataatccttttggccataagttttaagcaaaaagg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6989669 |
ctgaggagaagttaaaatttcgggatggaacatatattctaaagtagtgagcttatggaactgaaataatccttttggccataagttttaagcaaaaagg |
6989768 |
T |
|
| Q |
601 |
cggcatgtttttcagaaccta |
621 |
Q |
| |
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||||||||||||||||||||| |
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| T |
6989769 |
cggcatgtttttcagaaccta |
6989789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 398 - 600
Target Start/End: Original strand, 7045772 - 7045973
Alignment:
| Q |
398 |
ttaattatgtgattctttttataaccgcagatggtttgcattgctgatcccccttatgacaaatcactccaacaattacaaagctttttatctggtctag |
497 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| |
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|
| T |
7045772 |
ttaattatctgattctttttatagctgcagatggtttgcattgctgatcccccttatgacaagtcactccaacaaccacaaagcattttatctagtctag |
7045871 |
T |
|
| Q |
498 |
tctctgaggagaagttaaaatttcgggatggaacgtatattctaaagtagtgagcttatggaactgaaataatccttttggccataagttttaagcaaaa |
597 |
Q |
| |
|
||||||||||||||||| || ||||| ||||| ||| | ||| |||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
7045872 |
tctctgaggagaagttagaacttcggtatggattgtacagtcttaagtagtgagctaatggaactaaaataatccttttggccat-agttttaagcaaaa |
7045970 |
T |
|
| Q |
598 |
agg |
600 |
Q |
| |
|
||| |
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|
| T |
7045971 |
agg |
7045973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 600
Target Start/End: Original strand, 7000067 - 7000102
Alignment:
| Q |
564 |
aaataatccttttggccataagttttaagcaaaaagg |
600 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7000067 |
aaataatccttttggccat-agttttaagcaaaaagg |
7000102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 398 - 600
Target Start/End: Original strand, 14605 - 14806
Alignment:
| Q |
398 |
ttaattatgtgattctttttataaccgcagatggtttgcattgctgatcccccttatgacaaatcactccaacaattacaaagctttttatctggtctag |
497 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| |
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|
| T |
14605 |
ttaattatctgattctttttatagctgcagatggtttgcattgctgatcccccttatgacaagtcactccaacaaccacaaagcattttatctagtctag |
14704 |
T |
|
| Q |
498 |
tctctgaggagaagttaaaatttcgggatggaacgtatattctaaagtagtgagcttatggaactgaaataatccttttggccataagttttaagcaaaa |
597 |
Q |
| |
|
||||||||||||||||| || ||||| ||||| ||| | ||| |||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
14705 |
tctctgaggagaagttagaacttcggtatggattgtacagtcttaagtagtgagctaatggaactaaaataatccttttggccat-agttttaagcaaaa |
14803 |
T |
|
| Q |
598 |
agg |
600 |
Q |
| |
|
||| |
|
|
| T |
14804 |
agg |
14806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 425 - 600
Target Start/End: Complemental strand, 31958207 - 31958029
Alignment:
| Q |
425 |
cagatggtttgcattgctgatcccccttatgacaaatcactccaacaattacaaagctttttatctggtctagtctctgaggagaagttaaaatttcggg |
524 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || |||||| |
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|
| T |
31958207 |
cagatgttttgcattgctgatcccccttatgacaaatcactccaacaactacaaagctttttatctggtctagtctctgaggaaaagttagaacttcggg |
31958108 |
T |
|
| Q |
525 |
atggaacgtatattcta---aagtagtgagcttatggaactgaaataatccttttggccataagttttaagcaaaaagg |
600 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
31958107 |
atggagtgtactttctaaagaagtagtgagcttatggaactatggtcatccttttggccataagttttaagcaaaaagg |
31958029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 380 - 618
Target Start/End: Complemental strand, 31895224 - 31894976
Alignment:
| Q |
380 |
ataacatgatcaacaagattaattatgtgattct-------ttttataaccgcagatggtttgcattgctgatcccccttatgacaaatcactccaacaa |
472 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| || || ||| |||||||||| ||||||||||||||||||||||||| |||||||| || ||| |
|
|
| T |
31895224 |
ataacatgatcaacaagattacttacgtgatactcagtcgtttctattaccgcagatgttttgcattgctgatcccccttatgataaatcacttcatcaa |
31895125 |
T |
|
| Q |
473 |
ttacaaagctttttatctggtctagtctctgaggagaagttaaaatttcgggatggaacgtatattcta---aagtagtgagcttatggaactgaaataa |
569 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||| || ||||||||||| ||| ||||| |||||| | |||||||||||| | | |
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|
| T |
31895124 |
ctacaaagctttttatctgggctagtatctgaggagaagttagaacttcgggatggagtgtactttctaaagaagtagcggccttatggaactgtggtca |
31895025 |
T |
|
| Q |
570 |
tccttttggccataagttttaagcaaaaaggcggcatgtttttcagaac |
618 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | ||||||| |||||| |
|
|
| T |
31895024 |
tccttttggccacaagttttaagcaaaaaggtgaaatgttttacagaac |
31894976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 236 - 361
Target Start/End: Complemental strand, 31958422 - 31958297
Alignment:
| Q |
236 |
tgaataaagatatctaacatgcattgtattgtggcagaaatttatcttggggatgctcacaaacctcggtagcatgacattagaccgcattcacaatatg |
335 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||| |
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|
| T |
31958422 |
tgaataaagatatctaacatgtattgttttatggcagaaatttatcttggggatgctcacaaactttggtagcatggcattagatcgcattcacaatact |
31958323 |
T |
|
| Q |
336 |
ctcaaggtattaatggttttacacct |
361 |
Q |
| |
|
||||||||| |||||||||| ||||| |
|
|
| T |
31958322 |
ctcaaggtaataatggtttttcacct |
31958297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 236 - 360
Target Start/End: Complemental strand, 31895407 - 31895283
Alignment:
| Q |
236 |
tgaataaagatatctaacatgcattgtattgtggcagaaatttatcttggggatgctcacaaacctcggtagcatgacattagaccgcattcacaatatg |
335 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
31895407 |
tgaataaagatatctaacatgtattgttttatggcagaaatttatcttagggatgctcacaaactttggtagcatgacattagatcgcattcacaatact |
31895308 |
T |
|
| Q |
336 |
ctcaaggtattaatggttttacacc |
360 |
Q |
| |
|
||||||||| ||||||||| |||| |
|
|
| T |
31895307 |
ctcaaggtaagaatggtttttcacc |
31895283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 31895898 - 31895842
Alignment:
| Q |
22 |
ggccttggtagaaaatcaacttcggaaggagatggctgtgtatgaggtatatgaaat |
78 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
31895898 |
ggcctcggtagaaaatcaacttcggaaggagatgactgtgtatgaggtacatgaaat |
31895842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 31958877 - 31958821
Alignment:
| Q |
22 |
ggccttggtagaaaatcaacttcggaaggagatggctgtgtatgaggtatatgaaat |
78 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
31958877 |
ggcctcggtagaaaatcaacttcggaaggagatgactgtgtatgaggtacatgaaat |
31958821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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