View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_low_80 (Length: 270)

Name: NF21097_low_80
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21097_low_80
NF21097_low_80
[»] chr3 (4 HSPs)
chr3 (20-252)||(31723045-31723277)
chr3 (120-189)||(20502086-20502155)
chr3 (114-174)||(43875625-43875685)
chr3 (122-189)||(36646400-36646467)
[»] chr2 (8 HSPs)
chr2 (137-189)||(6988115-6988167)
chr2 (114-173)||(10143149-10143208)
chr2 (129-189)||(43141863-43141923)
chr2 (114-163)||(5043604-5043653)
chr2 (122-163)||(11513883-11513924)
chr2 (137-190)||(40837452-40837505)
chr2 (124-165)||(43635143-43635184)
chr2 (146-190)||(1056370-1056414)
[»] chr5 (2 HSPs)
chr5 (120-168)||(34245707-34245755)
chr5 (128-173)||(26209447-26209492)
[»] scaffold0091 (1 HSPs)
scaffold0091 (118-173)||(6933-6988)
[»] chr8 (2 HSPs)
chr8 (118-173)||(5227516-5227571)
chr8 (122-172)||(31884579-31884629)
[»] chr4 (3 HSPs)
chr4 (114-189)||(23819066-23819141)
chr4 (135-189)||(24370971-24371025)
chr4 (120-160)||(42866051-42866091)
[»] chr1 (6 HSPs)
chr1 (129-174)||(42556664-42556709)
chr1 (143-189)||(5150943-5150989)
chr1 (114-163)||(8130413-8130462)
chr1 (120-160)||(12564921-12564961)
chr1 (122-174)||(25005830-25005882)
chr1 (129-189)||(45205060-45205120)
[»] chr7 (2 HSPs)
chr7 (136-190)||(44241858-44241912)
chr7 (121-162)||(43399746-43399787)
[»] chr6 (3 HSPs)
chr6 (124-186)||(24838764-24838826)
chr6 (137-190)||(25100043-25100096)
chr6 (144-189)||(27998434-27998479)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 31723045 - 31723277
Alignment:
Q  20 aagggatgggtatgtcctctgagcatacacaacttgatcaaaactcacctccagacttctttgcaagggtttgttaattgttaagactctatacagtcag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31723045 aagggatgggtatgtcctctgagcatacacaacttgatcaaaactcacctccagacttctttgcaagggtttgttaattgttaagactctataaagtcag 31723144  T
Q  120 actgttttaatatacgctataagttgttttaataagctatcatgaagagtttataggaataagatgaaaattaagtcaataaagaataattagttgcctt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31723145 actgttttaatatacgctataagttgttttaataagctatcatgaagagtttataggaataagatgaaaattaagtcaataaagaataattggttgcctt 31723244  T
Q  220 cttcgaatgagatattcgagttcccgctctctg 252  Q
    |||||||||||||||||||||||||||| ||||    
T  31723245 cttcgaatgagatattcgagttcccgctttctg 31723277  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 20502155 - 20502086
Alignment:
Q  120 actgttttaatatacgctataagttgttttaataagctatcatgaagagtttataggaataagatgaaaa 189  Q
    |||||||| |||||||||||||| |||||| |||||||||| ||||||| ||||  ||||||| ||||||    
T  20502155 actgttttcatatacgctataagctgttttcataagctatcctgaagagcttatgagaataagctgaaaa 20502086  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 43875625 - 43875685
Alignment:
Q  114 agtcagactgttttaatatacgctataagttgttttaataagctatcatgaagagtttata 174  Q
    ||||| |||||| | ||||| ||||||||||||||| ||||||||||||| |||| |||||    
T  43875625 agtcaaactgttctcatataagctataagttgttttcataagctatcatggagagcttata 43875685  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 36646467 - 36646400
Alignment:
Q  122 tgttttaatatacgctataagttgttttaataagctatcatgaagagtttataggaataagatgaaaa 189  Q
    |||||| ||||| | ||||| ||||||| |||||||||| |  ||||||||||| |||||||||||||    
T  36646467 tgttttcatataagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaa 36646400  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 6988115 - 6988167
Alignment:
Q  137 tataagttgttttaataagctatcatgaagagtttataggaataagatgaaaa 189  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  6988115 tataagttgttttcataagctatcttgaagagtttatagaaataagatgaaaa 6988167  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 10143149 - 10143208
Alignment:
Q  114 agtcagactgttttaatatacgctataagttgttttaataagctatcatgaagagtttat 173  Q
    ||||| |||||||| ||||| |||||||||| |||| ||||||||||||| |||||||||    
T  10143149 agtcaaactgtttttatataagctataagtttttttcataagctatcatggagagtttat 10143208  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 43141863 - 43141923
Alignment:
Q  129 atatacgctataagttgttttaataagctatcatgaagagtttataggaataagatgaaaa 189  Q
    ||||| |||||||| |||||| |||||||||| |||||||||||| | ||||| |||||||    
T  43141863 atataagctataagatgttttcataagctatcctgaagagtttatggaaataaaatgaaaa 43141923  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 5043653 - 5043604
Alignment:
Q  114 agtcagactgttttaatatacgctataagttgttttaataagctatcatg 163  Q
    ||||| |||||||| ||||| |||| |||||||||| |||||||||||||    
T  5043653 agtcaaactgttttcatataagctagaagttgttttcataagctatcatg 5043604  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 11513883 - 11513924
Alignment:
Q  122 tgttttaatatacgctataagttgttttaataagctatcatg 163  Q
    |||||| ||||| ||||||||||||||| |||||||||||||    
T  11513883 tgttttcatataagctataagttgttttcataagctatcatg 11513924  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 40837505 - 40837452
Alignment:
Q  137 tataagttgttttaataagctatcatgaagagtttataggaataagatgaaaat 190  Q
    |||| |||||||||||||||||||||| |||| |||| | |||||| |||||||    
T  40837505 tatatgttgttttaataagctatcatgtagagcttatggaaataagctgaaaat 40837452  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 43635184 - 43635143
Alignment:
Q  124 ttttaatatacgctataagttgttttaataagctatcatgaa 165  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  43635184 tttttatatacgctataagttgttctcataagctatcatgaa 43635143  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 1056414 - 1056370
Alignment:
Q  146 ttttaataagctatcatgaagagtttataggaataagatgaaaat 190  Q
    |||| |||||||||| |||||||||||||| |||||| |||||||    
T  1056414 ttttcataagctatcttgaagagtttatagaaataagctgaaaat 1056370  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 34245707 - 34245755
Alignment:
Q  120 actgttttaatatacgctataagttgttttaataagctatcatgaagag 168  Q
    |||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  34245707 actgttttaatataagctataagttgtttttataagctatcatggagag 34245755  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 26209492 - 26209447
Alignment:
Q  128 aatatacgctataagttgttttaataagctatcatgaagagtttat 173  Q
    |||||| |||||||| |||||| |||||||||||||||| ||||||    
T  26209492 aatataagctataagctgttttcataagctatcatgaagtgtttat 26209447  T

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Target: scaffold0091 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 6933 - 6988
Alignment:
Q  118 agactgttttaatatacgctataagttgttttaataagctatcatgaagagtttat 173  Q
    |||||||||||||||| |||||||| ||||||  ||||||||||||||||| ||||    
T  6933 agactgttttaatataagctataagctgtttttgtaagctatcatgaagagcttat 6988  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 5227516 - 5227571
Alignment:
Q  118 agactgttttaatatacgctataagttgttttaataagctatcatgaagagtttat 173  Q
    |||||||||||||||| |||||||| ||||||  ||||||||||||||||| ||||    
T  5227516 agactgttttaatataagctataagctgtttttgtaagctatcatgaagagcttat 5227571  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 31884579 - 31884629
Alignment:
Q  122 tgttttaatatacgctataagttgttttaataagctatcatgaagagttta 172  Q
    |||||| ||||| ||||||| ||||||| ||||||||||||| ||||||||    
T  31884579 tgttttcatataagctataaattgttttcataagctatcatggagagttta 31884629  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 23819066 - 23819141
Alignment:
Q  114 agtcagactgttttaatatacgctataagttgttttaataagctatcatgaagagtttataggaataagatgaaaa 189  Q
    ||||| |||||||| ||||| | |||||  |||||| |||||||||| ||||||| |||||| |||||||||||||    
T  23819066 agtcaaactgttttcatataagttataacatgttttcataagctatcttgaagagcttatagaaataagatgaaaa 23819141  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 24371025 - 24370971
Alignment:
Q  135 gctataagttgttttaataagctatcatgaagagtttataggaataagatgaaaa 189  Q
    ||||||||||||||| |||||||||| | || ||||||||| |||||| ||||||    
T  24371025 gctataagttgttttcataagctatcctaaatagtttatagaaataagctgaaaa 24370971  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 42866051 - 42866091
Alignment:
Q  120 actgttttaatatacgctataagttgttttaataagctatc 160  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  42866051 actgtttttatataagctataagttgttttcataagctatc 42866091  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 42556709 - 42556664
Alignment:
Q  129 atatacgctataagttgttttaataagctatcatgaagagtttata 174  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  42556709 atataagctataagttgttttcataagctatcatggagagtttata 42556664  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 5150943 - 5150989
Alignment:
Q  143 ttgttttaataagctatcatgaagagtttataggaataagatgaaaa 189  Q
    ||||||| |||||||||||||||||| |||||| |||||| ||||||    
T  5150943 ttgttttcataagctatcatgaagagcttatagaaataagttgaaaa 5150989  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 8130413 - 8130462
Alignment:
Q  114 agtcagactgttttaatatacgctataagttgttttaataagctatcatg 163  Q
    ||||| |||||||| | ||| ||||||||||||||| |||||||||||||    
T  8130413 agtcaaactgttttcacataagctataagttgttttcataagctatcatg 8130462  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 12564961 - 12564921
Alignment:
Q  120 actgttttaatatacgctataagttgttttaataagctatc 160  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  12564961 actgttttcatataagctataagttgttttcataagctatc 12564921  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 25005882 - 25005830
Alignment:
Q  122 tgttttaatatacgctataagttgttttaataagctatcatgaagagtttata 174  Q
    |||||| ||||| ||||||||||||||| |||||||||| || |||| |||||    
T  25005882 tgttttcatataagctataagttgttttcataagctatcctggagagcttata 25005830  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 45205060 - 45205120
Alignment:
Q  129 atatacgctataagttgttttaataagctatcatgaagagtttataggaataagatgaaaa 189  Q
    ||||| |||| |||||||||| ||||||||||||| |||||| || | |||||| ||||||    
T  45205060 atataagctagaagttgttttcataagctatcatgtagagttcatggaaataagctgaaaa 45205120  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 44241858 - 44241912
Alignment:
Q  136 ctataagttgttttaataagctatcatgaagagtttataggaataagatgaaaat 190  Q
    |||||||||||||| |||||||||| |||| || |||||| |||||| |||||||    
T  44241858 ctataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 44241912  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 43399787 - 43399746
Alignment:
Q  121 ctgttttaatatacgctataagttgttttaataagctatcat 162  Q
    ||||||||| ||| |||||||||||| |||||||||||||||    
T  43399787 ctgttttaaaataagctataagttgtcttaataagctatcat 43399746  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 24838826 - 24838764
Alignment:
Q  124 ttttaatatacgctataagttgttttaataagctatcatgaagagtttataggaataagatga 186  Q
    |||| ||||| |||||||| || ||| ||||||||||||| |||| |||||| ||||||||||    
T  24838826 ttttcatataagctataagctgatttcataagctatcatggagagcttatagaaataagatga 24838764  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 25100043 - 25100096
Alignment:
Q  137 tataagttgttttaataagctatcatgaagagtttataggaataagatgaaaat 190  Q
    ||||||||||||| |||||||||| | ||||| |||||| |||||| |||||||    
T  25100043 tataagttgttttcataagctatcttaaagagcttatagaaataagttgaaaat 25100096  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 27998479 - 27998434
Alignment:
Q  144 tgttttaataagctatcatgaagagtttataggaataagatgaaaa 189  Q
    ||||||||||| |||| ||||||||||||||| |||||| ||||||    
T  27998479 tgttttaataacctataatgaagagtttatagaaataagctgaaaa 27998434  T

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