View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_low_84 (Length: 255)

Name: NF21097_low_84
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21097_low_84
NF21097_low_84
[»] chr5 (2 HSPs)
chr5 (98-250)||(1205875-1206027)
chr5 (1-80)||(1206065-1206144)
[»] chr7 (2 HSPs)
chr7 (110-188)||(37486301-37486379)
chr7 (158-203)||(2248693-2248738)
[»] chr8 (1 HSPs)
chr8 (111-173)||(10455929-10455991)
[»] chr4 (1 HSPs)
chr4 (152-184)||(8942751-8942783)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 98 - 250
Target Start/End: Complemental strand, 1206027 - 1205875
Alignment:
Q  98 gttcacatgactctagtagaataaactaatactgcatttgtacaaagaaatgtcatgaacattctagaatgtagtatttagaatatacctcccgcgtcta 197  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1206027 gttcacatgactctagtagaataaactaatactgcatttctacaaggaaatgtcatgaacattctagaatgtagtatttagaatatacctcccccgtcta 1205928  T
Q  198 taaatatgtaaacatatatgtacaattatattcaccactacatctctgctcct 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1205927 taaatatgtaaacatatatgtacaattatattcaccactacatctctcctcct 1205875  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 1206144 - 1206065
Alignment:
Q  1 tcactgccttgattagaagaaaatagaggttatgttaaattcatgatgggaaagagcatggggatgaaaaactaattatt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1206144 tcactgccttgattagaagaaaatagaggttatgttaaattcatgatgggaaagagcatggggatgaaaaactaattatt 1206065  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 37486379 - 37486301
Alignment:
Q  110 ctagtagaataaactaatactgcatttgtacaaagaaatgtcatgaacattctagaatgtagtatttagaatatacctc 188  Q
    ||||||||||||| ||||||  |||||    || ||||||||||||||||||||||||||||||| |||||||||||||    
T  37486379 ctagtagaataaattaatacgacattttcgtaaggaaatgtcatgaacattctagaatgtagtatctagaatatacctc 37486301  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 2248693 - 2248738
Alignment:
Q  158 attctagaatgtagtatttagaatatacctcccgcgtctataaata 203  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||||    
T  2248693 attctagaatgtagtatctagaatatacctcccacatctataaata 2248738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 10455991 - 10455929
Alignment:
Q  111 tagtagaataaactaatactgcatttgtacaaagaaatgtcatgaacattctagaatgtagta 173  Q
    |||||||||||||||||||| ||||| || ||  |||| |||||||||||||||||| |||||    
T  10455991 tagtagaataaactaatactacatttatataagaaaatatcatgaacattctagaatttagta 10455929  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 8942783 - 8942751
Alignment:
Q  152 atgaacattctagaatgtagtatttagaatata 184  Q
    ||||||||| |||||||||||||||||||||||    
T  8942783 atgaacattttagaatgtagtatttagaatata 8942751  T

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