View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_low_86 (Length: 254)
Name: NF21097_low_86
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_86 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 6060772 - 6060996
Alignment:
| Q |
10 |
aagaatatttatacgagatagttaggaattatttttctaataannnnnnnaagtgagttgcgcgtctgaagctcacaagatttagagtagactttaaaat |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| |||||| |||||| |||||||| || |
|
|
| T |
6060772 |
aagaacatttatacgagatagttaggaattattcttctaataatttttttaagtgaattgcgcgtctgaagcttacaagagttagagcagactttagaac |
6060871 |
T |
|
| Q |
110 |
tcaaagatcgtttgcacatatatctacataccatccatcaaagacgtttgagttaatataataagtgagagacttcatagtaagaaatacaacatcatta |
209 |
Q |
| |
|
||||||| |||||||| | || ||| ||| | ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6060872 |
tcaaagaccgtttgcataggtacctatatatcttccatcaaagatgtttgagctaatataataagtgagagacttcatagtaagaaatacaacatcatga |
6060971 |
T |
|
| Q |
210 |
ttgttttcaaatagtttgagttaag |
234 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6060972 |
ttgttttcaaatagtttgagttaag |
6060996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University