View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_low_88 (Length: 253)
Name: NF21097_low_88
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_88 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 96 - 242
Target Start/End: Original strand, 40547019 - 40547165
Alignment:
| Q |
96 |
ttttgacatgtacaaatgtttgtgtttgtgtatattcattttcatacattttcacaggttgactatgcactagctgatcgatttcaaactatcgaagaca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40547019 |
ttttgacatgtacaaatgtttgtgtttgtgtatattcattttcatacattttcacacgttgactatgcactagctgatcgatttcaaactatcgaagaca |
40547118 |
T |
|
| Q |
196 |
tgaagaaactcaaatacacaacttgagtgataacaatgtataaagat |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40547119 |
tgaagaaactcaaatacacaacttgagtgatgacaatgtataaagat |
40547165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 40546816 - 40546899
Alignment:
| Q |
8 |
atataattctttacccttgatagaggttttgttggattagggagagatgatcaccaatagtgtaagattagggacttgagtatg |
91 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40546816 |
atatatttctttatccttgatagaggttttgttggattagggatagatgatcaccaatagtgtaagattagggacttgagtatg |
40546899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 30157872 - 30157785
Alignment:
| Q |
139 |
atacattttcacaggttgactatgcactagctgatcgatttcaaactatcgaagacatgaagaaactcaaatacacaacttgagtgat |
226 |
Q |
| |
|
||||||||||||||||||||| || ||| | ||| ||||||| |||||| ||||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
30157872 |
atacattttcacaggttgactctgtacttggtgaccgatttccaactattgaagacatgaagaaacttaaatatacaactcgagtgat |
30157785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University