View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_89 (Length: 253)
Name: NF21097_low_89
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_89 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 37068744 - 37068508
Alignment:
| Q |
1 |
aattcactttttgtcatattaaatttatacttgaatgagttaaaccattcttgaaaagagaaaattgtcaaggtactaacctnnnnnnnnnnnnnnnncg |
100 |
Q |
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| T |
37068744 |
aattcactttttgtcatattaaatttatacttgaatgagttaaaccattcttgaaaagagaaaattgtcaaggtactaacctaaaaaaaaagg------g |
37068651 |
T |
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| Q |
101 |
ggtggggggtactaacctggtggtatgtacccaattgaacctctaaggacatgagtggagctgatggaaacttgattagttgatctttgaatcagcaacc |
200 |
Q |
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| T |
37068650 |
gggggggggtactaacctggtggtatgtacccaattgaacctctaaggacatgagtggagctgatggaaacttgattagttgatctttgaatcagcaacc |
37068551 |
T |
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| Q |
201 |
tagccaaaccaaagtctccaacctttgcagccagatcttcatc |
243 |
Q |
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| T |
37068550 |
tagccaaaccaaagtctccaacctttgcagtcatatcttcatc |
37068508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 108 - 243
Target Start/End: Complemental strand, 37061164 - 37061029
Alignment:
| Q |
108 |
ggtactaacctggtggtatgtacccaattgaacctctaaggacatgagtggagctgatggaaacttgattagttgatctttgaatcagcaacctagccaa |
207 |
Q |
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||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
37061164 |
ggtactaacctggaggtatgtaaccaattgaacctctaagaacatgagtagagctgatggaaacttgactagttgatttttgaatcagcaacctagccaa |
37061065 |
T |
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| Q |
208 |
accaaagtctccaacctttgcagccagatcttcatc |
243 |
Q |
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| T |
37061064 |
accaaagtctccaacctttgcagtcatatcttcatc |
37061029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 37061205 - 37061154
Alignment:
| Q |
31 |
ttgaatgagttaaaccattcttgaaaagagaaaattgtcaaggtactaacct |
82 |
Q |
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||||| |||||||| ||||||||||||||| || || ||||||||||||||| |
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| T |
37061205 |
ttgaaggagttaaaacattcttgaaaagaggaagttatcaaggtactaacct |
37061154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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