View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_9 (Length: 632)
Name: NF21097_low_9
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 24 - 428
Target Start/End: Original strand, 39797245 - 39797649
Alignment:
| Q |
24 |
gtgcatgtgtatatatagatgaatagatagatatatagaattttgtgtgtgcaggttggattcggaatgacgacggtggatttcttagctactgtagacg |
123 |
Q |
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| T |
39797245 |
gtgcatgtgtatatataaatgaatagatagatatctagaattttgtgtgtgcaggttggattcggaatgacgacggtggatttcttagctactgtagacg |
39797344 |
T |
|
| Q |
124 |
gatatccaaaaccagatgataaggtccgaacaacttcctccaaggttcaaggaggtggaaatgccggtaatgctttaacttgcgctgctcgacttggctt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39797345 |
gatatccaaaaccagatgataaggtccgaacaacttcctccaaggttcaaggaggtggaaatgccggaaatgctttaacttgcgctgctcgacttggctt |
39797444 |
T |
|
| Q |
224 |
gaaaccgaaactcatctccaaggttgctgatgatgctcaaggaaagagcatattggaggaactagaagctgattgtgttgatacttcctttattgttgta |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39797445 |
gaaaccgaaactcatctccaaggttgctgatgatgctcaaggaaagagcatattggaggaactagaagctgattgtgttgatacttcctttattgttgta |
39797544 |
T |
|
| Q |
324 |
agataagattcaccttattcattttattcatttctatttgaaattgaaatggatgattcattgcttttcttctcaaacttgtagcattaagcatgtatat |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39797545 |
agataagattcaccttattcattttattcatttctatttgaaattgaaatggatgattcattgcttttcttctcaaacttgtagcattaagcatgtatat |
39797644 |
T |
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| Q |
424 |
catta |
428 |
Q |
| |
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||||| |
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| T |
39797645 |
catta |
39797649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 423 - 624
Target Start/End: Original strand, 39797677 - 39797881
Alignment:
| Q |
423 |
tcattacttttatcaggatg---caatgttttaaagaatttttctgcttcactgttttcacttctatcctgattagttatcactttctgagttgaaaggt |
519 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39797677 |
tcattacttttatcaggatgatgcaatgttttaaagaatttttctgcttcactgttttcacttctatcctgattagttatcactttctgagtagaaaggt |
39797776 |
T |
|
| Q |
520 |
tattgttttatttttcaggtatccaagggtggcagttcaacattttcgtatgtactagtagacacccaaacgtaagccagttacttgtatgttttatcct |
619 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39797777 |
tattcttttatttttcaggtatccaagggtggcagttcaacattttcgtatgtactagtagacacccaaacgtaagccagttacttgtatgttttatcct |
39797876 |
T |
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| Q |
620 |
ttgct |
624 |
Q |
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||||| |
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| T |
39797877 |
ttgct |
39797881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 29929949 - 29929913
Alignment:
| Q |
166 |
aggttcaaggaggtggaaatgccggtaatgctttaac |
202 |
Q |
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|||||||||||||||| |||||||| ||||||||||| |
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| T |
29929949 |
aggttcaaggaggtggtaatgccggcaatgctttaac |
29929913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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