View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_92 (Length: 250)
Name: NF21097_low_92
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_92 |
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Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 1826071 - 1826142
Alignment:
| Q |
83 |
acctcgctttaaaatttggcttagatcccaaaatgtgttgggtcagccgttaaaccaaaagaagtatacaat |
154 |
Q |
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| T |
1826071 |
acctcactttaaaatttggcttagatcccaaaatgtgttgggtcagccgttaaaccaaaagaagtatacaat |
1826142 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 1829394 - 1829461
Alignment:
| Q |
183 |
aaattattaaagttttgaaaggcttagctaccaagagaaaatcaatgctcaaggctttgaccacttgc |
250 |
Q |
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| T |
1829394 |
aaattattaaagttttgaaaggctttgataccaagagaaaattaatgctcaaggctttgaccacttgc |
1829461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 191
Target Start/End: Original strand, 1828857 - 1828896
Alignment:
| Q |
152 |
aattaaaaataccgcaaatatatatagtttaaaattatta |
191 |
Q |
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| T |
1828857 |
aattaaaaataccgtaaatatatatagtttaaaattatta |
1828896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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