View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_96 (Length: 248)
Name: NF21097_low_96
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_96 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 48236303 - 48236071
Alignment:
| Q |
16 |
aaaatgttgtcaaatagtagcagcacgctataacattgttatgcagcggagtttgaacaaattgctattgacaacgtttgtttacctttttccacttctt |
115 |
Q |
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| T |
48236303 |
aaaatgttgtcaaatagtagcagcacgctataacattgttatgcagcggagtttgaacaaattgctattgacaacgtttgtttacctttttccacttctt |
48236204 |
T |
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| Q |
116 |
aaactttgactgccactcatctttttgttatgacaagaatatgtttacacaattatgacaatatactttttcctccttacgtgcacaggttgaggtacta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48236203 |
aaactttgactgccactcatctttttgttatgacaagaatatgtttacacaattatgacaatatactttttcctccttacatgcacaggttgaggtacta |
48236104 |
T |
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| Q |
216 |
agcagtattagacatccaaatatggtcctcctc |
248 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
48236103 |
agcagtattagacatccaaatatggtcctcctc |
48236071 |
T |
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