View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21098_high_6 (Length: 210)
Name: NF21098_high_6
Description: NF21098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21098_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 23937652 - 23937831
Alignment:
| Q |
15 |
cataggtatagggtaagcataagtgtggaaatttggctcaacatgaacaaggaacaccattccctcgt---tttcagatgatgttccttccatagtatta |
111 |
Q |
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| T |
23937652 |
cataggtatagggtatgcataagtgtgaaaatttggctcaacatgaacaagaaacactatcccctcctcattttcagatgttgttccattcatagtatca |
23937751 |
T |
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| Q |
112 |
gtagtcataatgttgaagagattatcaagggcccacttaagagcatacaagcttccatcactctcatctattgccaccat |
191 |
Q |
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| T |
23937752 |
gtagccataatgttgaagaggttatcaagggcccacttaagagcatacaagcttccatcactctcatctattgccaccat |
23937831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 23931955 - 23932108
Alignment:
| Q |
32 |
cataagtgtggaaatttggctcaacatgaacaaggaacaccattccctcgttttcagatgatgttccttccatagtattagtagtcataatgttgaagag |
131 |
Q |
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| T |
23931955 |
cataattgtggaaaatgggttcaacatgaacaagaaacaccattccctcattttcagatgatgttccttccatggta------gtcataacgttgaagag |
23932048 |
T |
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| Q |
132 |
attatcaagggcccacttaagagcatacaagcttccatcactctcatctattgccaccat |
191 |
Q |
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| T |
23932049 |
attatcaagggcccacttaagggcataaaagcttccatcactttcatctattgccaccat |
23932108 |
T |
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