View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21098_low_2 (Length: 425)
Name: NF21098_low_2
Description: NF21098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21098_low_2 |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 405
Target Start/End: Complemental strand, 52133790 - 52133396
Alignment:
| Q |
11 |
gtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaagacgaactcttgaacccaagagctcctgt |
110 |
Q |
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| T |
52133790 |
gtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaggaggaactcttgaacccaatagctcctgt |
52133691 |
T |
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| Q |
111 |
ctcttctgctggaattgctggctttcttcccacaaatgatgctgatgcaaataacatcgtaggagctgaaggaactttgtactatagatgctcaaaccaa |
210 |
Q |
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| T |
52133690 |
ctcttctgctggaattgctggctttcttcccgcaaatgatgcagatgccaataacatcgtaggagatgaagtaactttgtactatagatgcttaaacagg |
52133591 |
T |
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| Q |
211 |
tgtgcttatgtcacatgtgatatttcaactcgttgttctggttgcaatcaaactatgaaccatcaaatacattatatcggagagaaggctgttgaagaga |
310 |
Q |
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| T |
52133590 |
tgtgcttatgtcacatgtgatagctcaactcgttgtattaattgcagtcaagttatggcctatcaaatggattatattggaaagaaggctgtccgaaaga |
52133491 |
T |
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| Q |
311 |
acatttcgactgcgaatggttttgtgaaagatgttgtgacatttatggtgatggatgatttagtagttcaaccaatgtcaaccatatcaagcatt |
405 |
Q |
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| T |
52133490 |
acatttcgactgcgaatggttttgtgaaagatgttgtgacatttatggtgatggatgatttagtcgttcagccaatgtcaacaatatcaagcatt |
52133396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 218 - 405
Target Start/End: Complemental strand, 8793 - 8606
Alignment:
| Q |
218 |
atgtcacatgtgatatttcaactcgttgttctggttgcaatcaaactatgaaccatcaaatacattatatcggagagaaggctgttgaagagaacatttc |
317 |
Q |
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| T |
8793 |
atgtcacatgtgatagctcaactcgttgttcctgttgcagtagtgctatgaatgtacaagtaaattatgttggaaaaaaggttgttgaagataacgtttc |
8694 |
T |
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| Q |
318 |
gactgcgaatggttttgtgaaagatgttgtgacatttatggtgatggatgatttagtagttcaaccaatgtcaaccatatcaagcatt |
405 |
Q |
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| T |
8693 |
tattaagaatggttttgtgaaagatgttgtgacatttatggtaatggacgatttagtggttcagccaatgtcaaccatatcaagcatt |
8606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 9000 - 8865
Alignment:
| Q |
11 |
gtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaagacgaactcttgaacccaagagctcctgt |
110 |
Q |
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||||||| ||||| |||||| | |||||||||||| |||| |||||||||||||||||| | ||||||||||| | | ||||||| ||||||||| | |
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| T |
9000 |
gtagcattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaactaaagaggttttgctgaaccccagagctcctat |
8901 |
T |
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| Q |
111 |
ctcttctgctggaattgctggctttcttcccacaaa |
146 |
Q |
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| T |
8900 |
ctattcaactgaaattgcaggccttcttcccgcaaa |
8865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 17020270 - 17020342
Alignment:
| Q |
11 |
gtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaaga |
83 |
Q |
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| T |
17020270 |
gtagcattggtaatctctataacagtgttgaaactttgtccgatcattatatggaacaagaccaaactaaaga |
17020342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 17550707 - 17550779
Alignment:
| Q |
11 |
gtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaaga |
83 |
Q |
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| T |
17550707 |
gtagcattggtaatctctataacagtgttgaaactttgtccgatcattatatggaacaagaccaaactaaaga |
17550779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 17016521 - 17016475
Alignment:
| Q |
325 |
aatggttttgtgaaagatgttgtgacatttatggtgatggatgattt |
371 |
Q |
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| T |
17016521 |
aatggttttgtgaaagatgttgtgactttcatggtcatggatgattt |
17016475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 17546958 - 17546912
Alignment:
| Q |
325 |
aatggttttgtgaaagatgttgtgacatttatggtgatggatgattt |
371 |
Q |
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| T |
17546958 |
aatggttttgtgaaagatgttgtgactttcatggtcatggatgattt |
17546912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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